Schistosoma mansoni lncRNAs Database



This site contains the web resource described in the paper "Atlas of Schistosoma mansoni long non-coding RNAs and their expression correlation to protein-coding genes" (2018) by Elton J. R. Vasconcelos, Vinícius C. Mesel, Lucas F. daSilva, David S. Pires, Guilherme M. Lavezzo, Adriana S. A. Pereira, Murilo S. Amaral and Sergio Verjovski-Almeida, Database, Volume 2018: bay068, https://doi.org/10.1093/database/bay068.


Based on data from Vasconcelos, EJR et al., The Schistosoma mansoni genome encodes thousands of long noncoding RNAs predicted to be functional at different parasite life-cycle stages. Scientific Reports 7: 10508, 2017.


Smp_202140.1 Data


Fig. 6A for with r ≥ 0.8 or r ≤ -0.8.

Expression Fold Change Data [log2(FC)] - Download data


Gene ID Cerc 3S 24S Male Female
SmLINC02255-IBu 0 -0.86 -1.80 -3.72 -4.71
SmLINC02630-IBu 0 -0.86 -1.66 -4.03 -11.09
SmLINC02657-IBu 0 -0.90 -1.95 -11.76 -11.76
SmLINC06128-IBu 0 -1.91 -4.82 -10.42 -10.44
SmLINC06535-IBu 0 -0.47 -1.74 -4.21 -5.43
SmLINC06892-IBu 0 -2.10 -3.44 -12.52 -12.52
Smp_202140.1 0 -1.27 -3.64 -10.44 -10.44

Pearson Correlation Coefficient Data - Download data


Compared Gene Gene Pearson Correlation Value p-value B.-H. adjusted p-value
Smp_202140.1 SmLINC02255-IBu 0.83 1.00e-04 1.50e-03
Smp_202140.1 SmLINC02630-IBu 0.83 1.00e-04 1.60e-03
Smp_202140.1 SmLINC02657-IBu 0.80 2.00e-04 3.00e-03
Smp_202140.1 SmLINC06128-IBu 0.83 1.00e-04 1.50e-03
Smp_202140.1 SmLINC06535-IBu 0.82 1.00e-04 1.80e-03
Smp_202140.1 SmLINC06892-IBu 0.88 1.06e-05 2.00e-04
Fig. S5 for with r ≥ 0.9 or r ≤ -0.9.

Expression Fold Change Data [log2(FC)] - Download data


Gene ID Cerc 3S 24S Male Female
SmLINC02455-IBu 0 -0.81 -2.44 -4.53 -4.60
Smp_005860.1 0 -1.88 -5.14 -8.12 -7.71
Smp_005860.3 0 -2.06 -4.24 -7.23 -8.92
Smp_032990.1 0 -1.53 -9.49 -13.75 -8.21
Smp_061580.1 0 -1.55 -4.87 -3.14 -2.48
Smp_066010.1 0 -2.34 -10.90 -6.48 -4.88
Smp_067980.1 0 -0.94 -11.67 -4.00 -4.18
Smp_077690.1 0 -0.88 -2.98 -12.11 -12.11
Smp_083340.4 0 -0.76 -5.02 -9.88 -12.95
Smp_085290.3 0 -2.11 -9.33 -13.07 -9.78
Smp_097750.1 0 -1.63 -3.99 -4.48 -3.56
Smp_110400.3 0 -1.47 -2.30 -8.95 -9.88
Smp_113760.1 0 -1.77 -5.35 -7.90 -7.26
Smp_119050.1 0 -1.30 -4.96 -4.14 -6.99
Smp_140680.2 0 -1.06 -11.75 -8.40 -8.18
Smp_145710.1 0 -1.79 -2.79 -7.90 -7.78
Smp_145810.2 0 -1.83 -3.47 -4.75 -10.08
Smp_159130.1 0 0.25 -4.61 -5.63 -8.00
Smp_167350.1 0 -0.80 -1.92 -3.39 -6.34
Smp_168080.2 0 -1.01 -12.06 -12.06 -12.06
Smp_182770.1 0 -1.46 -4.03 -8.25 -8.62
Smp_184460.1 0 -2.24 -5.26 -13.63 -13.63
Smp_185180.1 0 -1.60 -2.75 -5.44 -6.67
Smp_185350.1 0 -1.75 -2.87 -10.48 -10.48
Smp_185360.1 0 -2.43 -5.85 -12.83 -12.83
Smp_185370.1 0 -0.81 -2.32 -9.88 -9.93
Smp_188600.1 0 -1.05 -3.54 -4.81 -5.04
Smp_188900.1 0 -1.35 -4.02 -11.76 -11.76
Smp_190320.1 0 -2.26 -2.78 -8.01 -9.33
Smp_195150.1 0 -0.70 -1.90 -6.54 -7.80
Smp_199840.1 0 -1.81 -3.67 -4.48 -5.82
Smp_201750.1 0 -0.56 -4.79 -7.34 -11.47
Smp_201900.1 0 -0.73 -2.99 -4.99 -3.71
Smp_202140.1 0 -1.27 -3.64 -10.44 -10.44
Smp_206150.1 0 -1.95 -4.12 -11.47 -11.47

Pearson Correlation Coefficient Data - Download data


Compared Gene Gene Pearson Correlation Value p-value B.-H. adjusted p-value
Smp_202140.1 SmLINC02455-IBu 0.91 2.44e-06 1.00e-04
Smp_005860.1 Smp_202140.1 0.90 3.51e-06 1.00e-04
Smp_202140.1 Smp_005860.3 0.94 7.64e-08 9.00e-06
Smp_202140.1 Smp_032990.1 0.94 6.97e-08 8.46e-06
Smp_202140.1 Smp_061580.1 0.94 1.70e-07 1.55e-05
Smp_202140.1 Smp_066010.1 0.90 4.42e-06 1.00e-04
Smp_202140.1 Smp_067980.1 0.95 5.72e-08 7.39e-06
Smp_077690.1 Smp_202140.1 0.96 4.08e-09 1.26e-06
Smp_083340.4 Smp_202140.1 0.92 5.90e-07 3.68e-05
Smp_202140.1 Smp_085290.3 0.91 1.69e-06 7.75e-05
Smp_097750.1 Smp_202140.1 0.90 3.32e-06 1.00e-04
Smp_110400.3 Smp_202140.1 0.95 3.18e-08 4.97e-06
Smp_202140.1 Smp_113760.1 0.94 6.50e-08 8.07e-06
Smp_202140.1 Smp_119050.1 0.90 3.42e-06 1.00e-04
Smp_202140.1 Smp_140680.2 0.98 1.24e-10 1.33e-07
Smp_145710.1 Smp_202140.1 0.91 1.57e-06 7.33e-05
Smp_145810.2 Smp_202140.1 0.90 3.87e-06 1.00e-04
Smp_202140.1 Smp_159130.1 0.90 3.23e-06 1.00e-04
Smp_202140.1 Smp_167350.1 0.96 8.72e-09 2.08e-06
Smp_202140.1 Smp_168080.2 0.90 3.52e-06 1.00e-04
Smp_202140.1 Smp_182770.1 0.94 1.89e-07 1.67e-05
Smp_202140.1 Smp_184460.1 0.93 4.08e-07 2.85e-05
Smp_185180.1 Smp_202140.1 0.90 2.52e-06 1.00e-04
Smp_202140.1 Smp_185350.1 0.90 2.67e-06 1.00e-04
Smp_202140.1 Smp_185360.1 0.90 3.11e-06 1.00e-04
Smp_202140.1 Smp_185370.1 0.91 1.28e-06 6.36e-05
Smp_188600.1 Smp_202140.1 0.94 1.73e-07 1.57e-05
Smp_188900.1 Smp_202140.1 0.94 9.23e-08 1.02e-05
Smp_190320.1 Smp_202140.1 0.91 2.12e-06 9.08e-05
Smp_195150.1 Smp_202140.1 0.91 2.47e-06 1.00e-04
Smp_202140.1 Smp_199840.1 0.92 7.31e-07 4.28e-05
Smp_201750.1 Smp_202140.1 0.90 3.45e-06 1.00e-04
Smp_202140.1 Smp_201900.1 0.94 1.37e-07 1.34e-05
Smp_206150.1 Smp_202140.1 0.96 9.86e-09 2.26e-06