Schistosoma mansoni lncRNAs Database



This site contains the web resource described in the paper "Atlas of Schistosoma mansoni long non-coding RNAs and their expression correlation to protein-coding genes" (2018) by Elton J. R. Vasconcelos, Vinícius C. Mesel, Lucas F. daSilva, David S. Pires, Guilherme M. Lavezzo, Adriana S. A. Pereira, Murilo S. Amaral and Sergio Verjovski-Almeida, Database, Volume 2018: bay068, https://doi.org/10.1093/database/bay068.


Based on data from Vasconcelos, EJR et al., The Schistosoma mansoni genome encodes thousands of long noncoding RNAs predicted to be functional at different parasite life-cycle stages. Scientific Reports 7: 10508, 2017.


Smp_202120.1 Data


Fig. 6A for with r ≥ 0.8 or r ≤ -0.8.

Expression Fold Change Data [log2(FC)] - Download data


Gene ID Cerc 3S 24S Male Female
SmLINC02663-IBu 0 6.75 8.97 8.16 7.72
SmLINC04430-IBu 0 1.35 4.06 1.40 0.01
Smp_202120.1 0 -0.66 7.33 6.40 5.50

Pearson Correlation Coefficient Data - Download data


Compared Gene Gene Pearson Correlation Value p-value B.-H. adjusted p-value
Smp_202120.1 SmLINC02663-IBu 0.81 2.00e-04 2.50e-03
Smp_202120.1 SmLINC04430-IBu 0.85 4.45e-05 7.00e-04
Fig. S5 for with r ≥ 0.9 or r ≤ -0.9.

Expression Fold Change Data [log2(FC)] - Download data


Gene ID Cerc 3S 24S Male Female
Smp_042090.3 0 0.00 11.29 0.00 0.00
Smp_062420.4 0 -0.89 2.10 -11.39 -11.39
Smp_085110.3 0 8.59 12.67 0.00 0.00
Smp_202120.1 0 -0.66 7.33 6.40 5.50

Pearson Correlation Coefficient Data - Download data


Compared Gene Gene Pearson Correlation Value p-value B.-H. adjusted p-value
Smp_042090.3 Smp_202120.1 0.91 1.82e-06 8.14e-05
Smp_202120.1 Smp_062420.4 0.91 1.78e-06 8.01e-05
Smp_202120.1 Smp_085110.3 0.93 3.50e-07 2.57e-05