Schistosoma mansoni lncRNAs Database


This site contains the web resource described in the paper "Atlas of Schistosoma mansoni long non-coding RNAs and their expression correlation to protein-coding genes" (2018) by Elton J. R. Vasconcelos, Vinícius C. Mesel, Lucas F. daSilva, David S. Pires, Guilherme M. Lavezzo, Adriana S. A. Pereira, Murilo S. Amaral and Sergio Verjovski-Almeida, Database, Volume 2018: bay068, https://doi.org/10.1093/database/bay068.

Based on data from Vasconcelos, EJR et al., The Schistosoma mansoni genome encodes thousands of long noncoding RNAs predicted to be functional at different parasite life-cycle stages. Scientific Reports 7: 10508, 2017.

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Smp_201910.1 Data

Correlation between Smp_201910.1 Protein Coding Gene and neighbor SmLINC (neighbor to up to two Smps upstream or two Smps downstream of the SmLINC in the genome) or SmLINCs with putative trans-acting mechanisms, with correlation coefficient r ≥ 0.5 or r ≤ -0.5 [ Click Here for Details ]

Fig. 7A S3 for with r ≥ 0.5 or r ≤ -0.5.

Expression Fold Change Data [log2(FC)] - Download data

Pearson Correlation Coefficient Data - Download data

Correlation between Smp_201910.1 and robust SmLINCs (presenting four functional traits) across life cycle stages, with correlation coefficient r ≥ 0.8 or r ≤ -0.8 [ Click Here for Details ]

Fig. 6A for with r ≥ 0.8 or r ≤ -0.8.

Expression Fold Change Data [log2(FC)] - Download data

Gene ID Cerc 3S 24S Male Female
SmLINC00001-IBu 0 1.12 2.22 5.99 7.57
SmLINC00004-IBu 0 0.00 0.00 9.26 10.68
SmLINC00369-IBu 0 1.32 0.40 6.04 6.28
SmLINC00525-IBu 0 -1.18 -2.31 1.77 2.53
SmLINC00633-IBu 0 1.89 0.00 7.59 7.46
SmLINC01084-IBu 0 -4.17 -2.32 2.88 3.57
SmLINC01431-IBu 0 4.28 4.33 10.35 10.82
SmLINC01432-IBu 0 0.44 1.90 4.35 4.98
SmLINC02376-IBu 0 0.00 0.00 5.89 7.89
SmLINC04235-IBu 0 0.00 1.32 6.44 8.84
SmLINC04421-IBu 0 -0.40 -1.98 2.75 3.71
SmLINC04423-IBu 0 -0.15 -1.31 2.28 3.30
SmLINC04478-IBu 0 -1.64 -5.06 4.33 4.42
SmLINC04521-IBu 0 0.00 2.57 11.17 11.06
SmLINC05147-IBu 0 -2.38 -0.94 2.89 2.87
SmLINC05289-IBu 0 0.00 0.00 7.07 8.36
SmLINC05604-IBu 0 3.08 0.00 9.77 11.08
SmLINC06024-IBu 0 -2.97 -2.19 1.09 1.92
SmLINC06145-IBu 0 1.04 -4.71 4.38 4.76
SmLINC06239-IBu 0 -0.42 0.14 2.33 5.24
SmLINC06490-IBu 0 -0.11 0.31 -3.82 -4.89
Smp_201910.1 0 3.92 4.88 11.60 12.63

Pearson Correlation Coefficient Data - Download data

Compared Gene Gene Pearson Correlation Value p-value B.-H. adjusted p-value
Smp_201910.1 SmLINC00001-IBu 0.86 3.78e-05 6.00e-04
Smp_201910.1 SmLINC00004-IBu 0.87 1.57e-05 3.00e-04
Smp_201910.1 SmLINC00369-IBu 0.80 3.00e-04 3.20e-03
Smp_201910.1 SmLINC00525-IBu 0.86 3.32e-05 6.00e-04
Smp_201910.1 SmLINC00633-IBu 0.80 2.00e-04 2.80e-03
Smp_201910.1 SmLINC01084-IBu 0.85 4.47e-05 7.00e-04
Smp_201910.1 SmLINC01431-IBu 0.83 1.00e-04 1.60e-03
Smp_201910.1 SmLINC01432-IBu 0.91 2.51e-06 9.87e-05
Smp_201910.1 SmLINC02376-IBu 0.86 3.47e-05 6.00e-04
Smp_201910.1 SmLINC04235-IBu 0.85 5.84e-05 9.00e-04
Smp_201910.1 SmLINC04421-IBu 0.92 1.11e-06 5.53e-05
Smp_201910.1 SmLINC04423-IBu 0.93 2.77e-07 2.08e-05
Smp_201910.1 SmLINC04478-IBu 0.87 1.68e-05 3.00e-04
Smp_201910.1 SmLINC04521-IBu 0.86 2.99e-05 5.00e-04
Smp_201910.1 SmLINC05147-IBu 0.82 1.00e-04 2.00e-03
Smp_201910.1 SmLINC05289-IBu 0.84 6.52e-05 1.00e-03
Smp_201910.1 SmLINC05604-IBu 0.90 2.81e-06 1.00e-04
Smp_201910.1 SmLINC06024-IBu 0.89 5.11e-06 1.00e-04
Smp_201910.1 SmLINC06145-IBu 0.88 9.14e-06 2.00e-04
Smp_201910.1 SmLINC06239-IBu 0.83 1.00e-04 1.60e-03
Smp_201910.1 SmLINC06490-IBu -0.80 3.00e-04 3.10e-03

Correlation between Smp_201910.1 and highly differentially expressed Smps (log2 FC ≥ 10 in at least one developmental stage) and/or SmLINCs, with correlation coefficient r ≥ 0.9 or r ≤ -0.9 [ Click Here for Details ]

Fig. S5 for with r ≥ 0.9 or r ≤ -0.9.

Expression Fold Change Data [log2(FC)] - Download data

Gene ID Cerc 3S 24S Male Female
SmLINC01432-IBu 0 0.44 1.90 4.35 4.98
SmLINC01461-IBu 0 -0.51 -1.70 3.51 4.54
SmLINC02551-IBu 0 -0.21 1.64 4.04 5.37
SmLINC03103-IBu 0 0.00 0.00 7.82 8.26
SmLINC03607-IBu 0 0.00 0.00 6.53 7.93
SmLINC04421-IBu 0 -0.40 -1.98 2.75 3.71
SmLINC04423-IBu 0 -0.15 -1.31 2.28 3.30
SmLINC05604-IBu 0 3.08 0.00 9.77 11.08
SmLINC06799-IBu 0 -0.52 -0.67 -3.14 -5.31
Smp_001410.1 0 -0.48 1.28 4.40 4.84
Smp_003330.1 0 -1.88 -0.84 3.09 3.58
Smp_003610.2 0 2.58 2.54 6.59 7.15
Smp_008440.1 0 -0.09 -2.67 1.92 3.00
Smp_012800.1 0 0.22 -2.17 2.20 3.22
Smp_014430.1 0 -0.76 -1.15 4.00 4.28
Smp_019420.1 0 -0.41 -1.64 2.93 3.56
Smp_021790.2 0 -3.20 -1.56 2.95 3.87
Smp_024180.1 0 3.08 4.23 10.66 11.72
Smp_024180.2 0 -0.35 -0.80 9.03 10.04
Smp_025830.1 0 -0.75 -1.09 3.58 4.15
Smp_026340.1 0 -0.76 -1.34 2.33 3.13
Smp_030180.1 0 -0.12 -1.47 3.03 3.99
Smp_033260.1 0 0.00 0.00 11.56 12.33
Smp_036780.1 0 -1.09 0.17 2.85 3.49
Smp_037530.1 0 -0.36 -0.67 3.45 4.52
Smp_042400.1 0 -0.94 1.58 3.75 4.94
Smp_048930.1 0 0.20 0.76 3.10 4.09
Smp_050350.3 0 7.35 7.57 12.17 13.18
Smp_052760.1 0 0.82 -0.61 4.09 4.75
Smp_055630.1 0 -1.39 -1.99 2.49 3.08
Smp_062830.1 0 0.32 -0.37 3.05 3.65
Smp_063330.1 0 0.85 2.04 5.71 6.49
Smp_063530.1 0 0.94 3.38 8.24 9.42
Smp_066590.1 0 -0.35 -4.39 0.91 2.46
Smp_067090.1 0 0.53 -0.10 2.99 4.15
Smp_071610.1 0 0.17 0.43 2.66 4.14
Smp_074160.1 0 0.61 0.45 5.32 6.17
Smp_074390.1 0 0.42 2.20 4.70 6.33
Smp_079420.1 0 6.65 2.37 11.69 12.23
Smp_081900.2 0 1.97 2.83 5.94 6.91
Smp_089290.1 0 -0.57 1.49 5.98 6.95
Smp_091300.1 0 -0.26 -3.28 2.27 3.01
Smp_092990.1 0 -0.73 0.22 3.72 4.66
Smp_094050.1 0 0.00 6.75 11.34 12.21
Smp_098740.1 0 0.12 -2.67 3.09 3.95
Smp_099090.1 0 -0.35 -0.91 3.84 5.25
Smp_100450.1 0 0.44 0.15 6.69 7.24
Smp_103610.1 0 0.81 0.51 3.03 4.34
Smp_107750.1 0 0.44 0.15 6.69 7.24
Smp_108010.1 0 0.44 0.15 6.69 7.24
Smp_116960.1 0 0.44 0.15 6.69 7.24
Smp_122500.1 0 0.84 0.19 4.69 6.25
Smp_123240.1 0 -2.26 -1.40 1.18 2.57
Smp_126120.1 0 1.33 3.37 6.74 8.20
Smp_127930.1 0 0.51 1.34 3.29 4.16
Smp_128350.1 0 1.15 1.19 3.97 5.09
Smp_131790.1 0 -2.09 -2.80 1.12 2.06
Smp_136700.1 0 -0.70 -1.05 4.06 5.24
Smp_136760.1 0 0.06 -2.04 5.33 6.63
Smp_137000.2 0 7.58 1.98 11.35 11.89
Smp_137960.1 0 -0.78 -1.94 2.47 3.16
Smp_142800.1 0 -0.35 -4.83 0.47 1.47
Smp_142970.1 0 0.49 1.56 5.21 5.91
Smp_146460.1 0 -2.57 1.98 7.27 8.23
Smp_152960.1 0 0.65 1.52 4.41 5.40
Smp_153630.1 0 0.09 0.70 5.26 7.09
Smp_156930.1 0 0.00 0.00 11.62 12.40
Smp_157730.1 0 1.05 0.46 4.18 5.59
Smp_157760.1 0 -0.37 0.29 3.34 4.30
Smp_158620.1 0 -0.19 -0.50 3.70 5.00
Smp_162890.1 0 -0.14 0.40 3.97 4.86
Smp_166800.1 0 -0.50 0.17 2.51 4.03
Smp_170370.1 0 -2.98 -4.66 1.78 2.30
Smp_173660.1 0 -1.25 0.04 4.14 4.91
Smp_174720.1 0 -1.01 -4.25 1.64 2.34
Smp_175550.1 0 -0.39 -1.97 1.81 2.66
Smp_179950.1 0 3.74 4.21 7.37 8.78
Smp_180440.1 0 -0.08 -1.33 2.82 3.54
Smp_180930.1 0 0.47 -1.94 2.04 3.34
Smp_196480.1 0 -0.75 -2.06 3.39 4.05
Smp_201030.1 0 -0.08 -0.27 5.30 5.74
Smp_201100.1 0 -0.37 -1.01 2.37 3.82
Smp_201270.1 0 -3.12 -3.21 3.64 4.43
Smp_201470.1 0 -0.82 -1.23 2.49 3.62
Smp_201730.1 0 -0.37 -0.49 3.57 4.56
Smp_201910.1 0 3.92 4.88 11.60 12.63
Smp_202810.1 0 -1.19 -0.95 6.48 7.70
Smp_202870.1 0 0.00 1.49 6.01 7.06
Smp_202980.1 0 -1.30 -1.71 2.41 3.35
Smp_203170.1 0 0.43 -2.95 3.21 4.50
Smp_203780.1 0 -0.56 -2.16 2.17 3.14
Smp_204880.1 0 -0.92 -0.62 2.74 4.24
Smp_205510.1 0 -1.83 -1.83 4.36 5.09
Smp_210190.1 0 -0.41 -3.03 1.81 2.83
Smp_210830.1 0 0.16 -2.06 2.37 3.13
Smp_212850.1 0 0.39 0.13 3.46 4.38
Smp_212860.1 0 -0.24 0.04 3.38 3.96

Pearson Correlation Coefficient Data - Download data

Compared Gene Gene Pearson Correlation Value p-value B.-H. adjusted p-value
Smp_201910.1 SmLINC01432-IBu 0.91 2.51e-06 1.00e-04
Smp_201910.1 SmLINC01461-IBu 0.92 1.13e-06 5.82e-05
Smp_201910.1 SmLINC02551-IBu 0.92 7.05e-07 4.17e-05
Smp_201910.1 SmLINC03103-IBu 0.95 4.31e-08 6.11e-06
Smp_201910.1 SmLINC03607-IBu 0.92 7.01e-07 4.16e-05
Smp_201910.1 SmLINC04421-IBu 0.92 1.11e-06 5.74e-05
Smp_201910.1 SmLINC04423-IBu 0.93 2.77e-07 2.18e-05
Smp_201910.1 SmLINC05604-IBu 0.90 2.81e-06 1.00e-04
Smp_201910.1 SmLINC06799-IBu -0.91 2.41e-06 9.93e-05
Smp_201910.1 Smp_001410.1 0.91 2.23e-06 9.40e-05
Smp_003330.1 Smp_201910.1 0.92 1.09e-06 5.70e-05
Smp_003610.2 Smp_201910.1 0.91 2.04e-06 8.83e-05
Smp_008440.1 Smp_201910.1 0.92 7.79e-07 4.47e-05
Smp_012800.1 Smp_201910.1 0.94 1.80e-07 1.62e-05
Smp_014430.1 Smp_201910.1 0.90 3.45e-06 1.00e-04
Smp_019420.1 Smp_201910.1 0.94 1.19e-07 1.22e-05
Smp_021790.2 Smp_201910.1 0.92 6.04e-07 3.75e-05
Smp_024180.1 Smp_201910.1 0.93 2.18e-07 1.84e-05
Smp_024180.2 Smp_201910.1 0.94 1.49e-07 1.42e-05
Smp_201910.1 Smp_025830.1 0.90 3.41e-06 1.00e-04
Smp_201910.1 Smp_026340.1 0.93 3.67e-07 2.65e-05
Smp_201910.1 Smp_030180.1 0.92 6.44e-07 3.92e-05
Smp_033260.1 Smp_201910.1 0.93 3.70e-07 2.66e-05
Smp_036780.1 Smp_201910.1 0.90 2.91e-06 1.00e-04
Smp_201910.1 Smp_037530.1 0.92 8.55e-07 4.78e-05
Smp_042400.1 Smp_201910.1 0.92 9.81e-07 5.26e-05
Smp_048930.1 Smp_201910.1 0.90 3.97e-06 1.00e-04
Smp_050350.3 Smp_201910.1 0.92 8.21e-07 4.64e-05
Smp_052760.1 Smp_201910.1 0.91 1.61e-06 7.48e-05
Smp_201910.1 Smp_055630.1 0.95 5.31e-08 7.04e-06
Smp_062830.1 Smp_201910.1 0.92 1.04e-06 5.51e-05
Smp_201910.1 Smp_063330.1 0.91 1.71e-06 7.81e-05
Smp_201910.1 Smp_063530.1 0.90 2.64e-06 1.00e-04
Smp_066590.1 Smp_201910.1 0.90 3.02e-06 1.00e-04
Smp_067090.1 Smp_201910.1 0.95 4.21e-08 6.01e-06
Smp_071610.1 Smp_201910.1 0.91 1.53e-06 7.21e-05
Smp_074160.1 Smp_201910.1 0.93 4.58e-07 3.09e-05
Smp_074390.1 Smp_201910.1 0.92 8.00e-07 4.56e-05
Smp_201910.1 Smp_079420.1 0.90 3.50e-06 1.00e-04
Smp_081900.2 Smp_201910.1 0.95 5.46e-08 7.17e-06
Smp_089290.1 Smp_201910.1 0.90 3.17e-06 1.00e-04
Smp_091300.1 Smp_201910.1 0.94 1.36e-07 1.34e-05
Smp_092990.1 Smp_201910.1 0.92 7.41e-07 4.32e-05
Smp_094050.1 Smp_201910.1 0.91 1.78e-06 8.01e-05
Smp_098740.1 Smp_201910.1 0.94 1.48e-07 1.41e-05
Smp_099090.1 Smp_201910.1 0.90 3.46e-06 1.00e-04
Smp_201910.1 Smp_100450.1 0.97 9.42e-10 4.90e-07
Smp_103610.1 Smp_201910.1 0.94 1.21e-07 1.23e-05
Smp_201910.1 Smp_107750.1 0.97 9.42e-10 4.90e-07
Smp_201910.1 Smp_108010.1 0.97 9.42e-10 4.90e-07
Smp_116960.1 Smp_201910.1 0.97 9.42e-10 4.90e-07
Smp_201910.1 Smp_122500.1 0.92 1.11e-06 5.76e-05
Smp_123240.1 Smp_201910.1 0.92 7.96e-07 4.54e-05
Smp_201910.1 Smp_126120.1 0.91 1.46e-06 6.97e-05
Smp_127930.1 Smp_201910.1 0.90 2.77e-06 1.00e-04
Smp_128350.1 Smp_201910.1 0.93 4.48e-07 3.04e-05
Smp_201910.1 Smp_131790.1 0.91 1.77e-06 7.99e-05
Smp_201910.1 Smp_136700.1 0.90 3.99e-06 1.00e-04
Smp_136760.1 Smp_201910.1 0.93 4.11e-07 2.87e-05
Smp_201910.1 Smp_137000.2 0.90 3.73e-06 1.00e-04
Smp_137960.1 Smp_201910.1 0.94 1.32e-07 1.31e-05
Smp_142800.1 Smp_201910.1 0.92 9.52e-07 5.15e-05
Smp_142970.1 Smp_201910.1 0.90 3.26e-06 1.00e-04
Smp_146460.1 Smp_201910.1 0.91 2.44e-06 1.00e-04
Smp_201910.1 Smp_152960.1 0.92 8.54e-07 4.77e-05
Smp_153630.1 Smp_201910.1 0.91 1.56e-06 7.31e-05
Smp_201910.1 Smp_156930.1 0.94 6.12e-08 7.75e-06
Smp_201910.1 Smp_157730.1 0.92 6.25e-07 3.84e-05
Smp_157760.1 Smp_201910.1 0.91 1.55e-06 7.28e-05
Smp_158620.1 Smp_201910.1 0.90 3.05e-06 1.00e-04
Smp_201910.1 Smp_162890.1 0.92 5.16e-07 3.36e-05
Smp_201910.1 Smp_166800.1 0.90 4.64e-06 1.00e-04
Smp_170370.1 Smp_201910.1 0.91 1.23e-06 6.18e-05
Smp_201910.1 Smp_173660.1 0.90 2.69e-06 1.00e-04
Smp_174720.1 Smp_201910.1 0.92 7.87e-07 4.51e-05
Smp_201910.1 Smp_175550.1 0.93 2.72e-07 2.15e-05
Smp_179950.1 Smp_201910.1 0.96 3.45e-09 1.13e-06
Smp_201910.1 Smp_180440.1 0.93 4.41e-07 3.01e-05
Smp_180930.1 Smp_201910.1 0.90 3.55e-06 1.00e-04
Smp_196480.1 Smp_201910.1 0.90 2.59e-06 1.00e-04
Smp_201910.1 Smp_201030.1 0.90 4.67e-06 1.00e-04
Smp_201910.1 Smp_201100.1 0.95 4.26e-08 6.06e-06
Smp_201270.1 Smp_201910.1 0.97 7.06e-10 4.07e-07
Smp_201470.1 Smp_201910.1 0.94 1.86e-07 1.66e-05
Smp_201730.1 Smp_201910.1 0.92 7.34e-07 4.29e-05
Smp_202810.1 Smp_201910.1 0.96 4.21e-09 1.29e-06
Smp_202870.1 Smp_201910.1 0.94 1.35e-07 1.33e-05
Smp_201910.1 Smp_202980.1 0.91 1.73e-06 7.86e-05
Smp_201910.1 Smp_203170.1 0.94 1.15e-07 1.19e-05
Smp_203780.1 Smp_201910.1 0.95 3.93e-08 5.74e-06
Smp_204880.1 Smp_201910.1 0.91 2.21e-06 9.35e-05
Smp_205510.1 Smp_201910.1 0.90 3.92e-06 1.00e-04
Smp_210190.1 Smp_201910.1 0.93 2.25e-07 1.89e-05
Smp_210830.1 Smp_201910.1 0.90 3.02e-06 1.00e-04
Smp_212850.1 Smp_201910.1 0.91 1.84e-06 8.20e-05
Smp_201910.1 Smp_212860.1 0.91 1.90e-06 8.39e-05