Schistosoma mansoni lncRNAs Database



This site contains the web resource described in the paper "Atlas of Schistosoma mansoni long non-coding RNAs and their expression correlation to protein-coding genes" (2018) by Elton J. R. Vasconcelos, Vinícius C. Mesel, Lucas F. daSilva, David S. Pires, Guilherme M. Lavezzo, Adriana S. A. Pereira, Murilo S. Amaral and Sergio Verjovski-Almeida, Database, Volume 2018: bay068, https://doi.org/10.1093/database/bay068.


Based on data from Vasconcelos, EJR et al., The Schistosoma mansoni genome encodes thousands of long noncoding RNAs predicted to be functional at different parasite life-cycle stages. Scientific Reports 7: 10508, 2017.


Smp_201900.1 Data


Fig. 6A for with r ≥ 0.8 or r ≤ -0.8.

Expression Fold Change Data [log2(FC)] - Download data


Gene ID Cerc 3S 24S Male Female
SmLINC00037-IBu 0 0.38 -1.52 -5.66 -6.88
SmLINC00133-IBu 0 0.41 -1.72 -5.79 -6.76
SmLINC00282-IBu 0 0.07 -1.80 -4.82 -4.14
SmLINC00556-IBu 0 -0.74 -2.79 -5.06 -5.28
SmLINC01486-IBu 0 0.59 -1.26 -4.75 -5.22
SmLINC02255-IBu 0 -0.86 -1.80 -3.72 -4.71
SmLINC02630-IBu 0 -0.86 -1.66 -4.03 -11.09
SmLINC02657-IBu 0 -0.90 -1.95 -11.76 -11.76
SmLINC03849-IBu 0 -0.25 -0.95 -4.04 -4.58
SmLINC03930-IBu 0 -0.18 -2.11 -8.92 -4.64
SmLINC05284-IBu 0 -0.31 -1.54 -3.79 -5.97
SmLINC05716-IBu 0 0.29 -1.48 -4.28 -5.77
SmLINC05720-IBu 0 0.01 -1.80 -4.98 -8.04
SmLINC06535-IBu 0 -0.47 -1.74 -4.21 -5.43
SmLINC06892-IBu 0 -2.10 -3.44 -12.52 -12.52
Smp_201900.1 0 -0.73 -2.99 -4.99 -3.71

Pearson Correlation Coefficient Data - Download data


Compared Gene Gene Pearson Correlation Value p-value B.-H. adjusted p-value
Smp_201900.1 SmLINC00037-IBu 0.80 2.00e-04 2.90e-03
Smp_201900.1 SmLINC00133-IBu 0.82 1.00e-04 1.90e-03
Smp_201900.1 SmLINC00282-IBu 0.83 9.85e-05 1.30e-03
Smp_201900.1 SmLINC00556-IBu 0.82 1.00e-04 2.10e-03
Smp_201900.1 SmLINC01486-IBu 0.81 2.00e-04 2.30e-03
Smp_201900.1 SmLINC02255-IBu 0.86 3.90e-05 7.00e-04
Smp_201900.1 SmLINC02630-IBu 0.85 4.83e-05 8.00e-04
Smp_201900.1 SmLINC02657-IBu 0.82 1.00e-04 1.70e-03
Smp_201900.1 SmLINC03849-IBu 0.86 2.96e-05 5.00e-04
Smp_201900.1 SmLINC03930-IBu 0.84 8.27e-05 1.20e-03
Smp_201900.1 SmLINC05284-IBu 0.80 2.00e-04 2.70e-03
Smp_201900.1 SmLINC05716-IBu 0.80 2.00e-04 3.00e-03
Smp_201900.1 SmLINC05720-IBu 0.85 4.66e-05 8.00e-04
Smp_201900.1 SmLINC06535-IBu 0.92 6.14e-07 3.63e-05
Smp_201900.1 SmLINC06892-IBu 0.84 8.53e-05 1.20e-03
Fig. S5 for with r ≥ 0.9 or r ≤ -0.9.

Expression Fold Change Data [log2(FC)] - Download data


Gene ID Cerc 3S 24S Male Female
Smp_032970.1 0 -0.24 -2.98 -11.57 -7.79
Smp_067980.1 0 -0.94 -11.67 -4.00 -4.18
Smp_077690.1 0 -0.88 -2.98 -12.11 -12.11
Smp_140680.2 0 -1.06 -11.75 -8.40 -8.18
Smp_160230.1 0 -0.76 -3.24 -8.69 -10.72
Smp_188900.1 0 -1.35 -4.02 -11.76 -11.76
Smp_201900.1 0 -0.73 -2.99 -4.99 -3.71
Smp_202140.1 0 -1.27 -3.64 -10.44 -10.44

Pearson Correlation Coefficient Data - Download data


Compared Gene Gene Pearson Correlation Value p-value B.-H. adjusted p-value
Smp_032970.1 Smp_201900.1 0.91 1.68e-06 7.70e-05
Smp_201900.1 Smp_067980.1 0.92 7.39e-07 4.31e-05
Smp_077690.1 Smp_201900.1 0.93 3.99e-07 2.81e-05
Smp_201900.1 Smp_140680.2 0.94 1.92e-07 1.69e-05
Smp_201900.1 Smp_160230.1 0.90 2.59e-06 1.00e-04
Smp_188900.1 Smp_201900.1 0.91 1.28e-06 6.38e-05
Smp_202140.1 Smp_201900.1 0.94 1.37e-07 1.34e-05