Schistosoma mansoni lncRNAs Database



This site contains the web resource described in the paper "Atlas of Schistosoma mansoni long non-coding RNAs and their expression correlation to protein-coding genes" (2018) by Elton J. R. Vasconcelos, Vinícius C. Mesel, Lucas F. daSilva, David S. Pires, Guilherme M. Lavezzo, Adriana S. A. Pereira, Murilo S. Amaral and Sergio Verjovski-Almeida, Database, Volume 2018: bay068, https://doi.org/10.1093/database/bay068.


Based on data from Vasconcelos, EJR et al., The Schistosoma mansoni genome encodes thousands of long noncoding RNAs predicted to be functional at different parasite life-cycle stages. Scientific Reports 7: 10508, 2017.


Smp_201750.1 Data


Fig. 6A for with r ≥ 0.8 or r ≤ -0.8.

Expression Fold Change Data [log2(FC)] - Download data


Gene ID Cerc 3S 24S Male Female
SmLINC03930-IBu 0 -0.18 -2.11 -8.92 -4.64
Smp_201750.1 0 -0.56 -4.79 -7.34 -11.47

Pearson Correlation Coefficient Data - Download data


Compared Gene Gene Pearson Correlation Value p-value B.-H. adjusted p-value
Smp_201750.1 SmLINC03930-IBu 0.85 5.75e-05 9.00e-04
Fig. S5 for with r ≥ 0.9 or r ≤ -0.9.

Expression Fold Change Data [log2(FC)] - Download data


Gene ID Cerc 3S 24S Male Female
Smp_032920.1 0 -0.45 -4.95 -3.51 -6.20
Smp_056680.2 0 0.01 -3.20 -6.32 -3.44
Smp_056680.3 0 0.01 -3.20 -6.32 -3.44
Smp_077690.1 0 -0.88 -2.98 -12.11 -12.11
Smp_130700.1 0 0.19 -1.83 -3.63 -3.85
Smp_159130.1 0 0.25 -4.61 -5.63 -8.00
Smp_167350.1 0 -0.80 -1.92 -3.39 -6.34
Smp_178390.1 0 0.45 -1.39 -7.29 -7.87
Smp_181730.1 0 -0.37 -1.35 -5.07 -5.51
Smp_185350.1 0 -1.75 -2.87 -10.48 -10.48
Smp_197430.1 0 -1.10 -5.36 -5.36 -2.98
Smp_201750.1 0 -0.56 -4.79 -7.34 -11.47
Smp_202140.1 0 -1.27 -3.64 -10.44 -10.44
Smp_203980.1 0 -0.92 -4.57 -6.89 -8.25
Smp_206090.1 0 -0.17 -0.84 -12.35 -12.13

Pearson Correlation Coefficient Data - Download data


Compared Gene Gene Pearson Correlation Value p-value B.-H. adjusted p-value
Smp_201750.1 Smp_032920.1 0.90 2.76e-06 1.00e-04
Smp_056680.2 Smp_201750.1 0.92 7.48e-07 4.35e-05
Smp_201750.1 Smp_056680.3 0.92 7.48e-07 4.35e-05
Smp_201750.1 Smp_077690.1 0.93 2.17e-07 1.84e-05
Smp_201750.1 Smp_130700.1 0.92 9.03e-07 4.96e-05
Smp_201750.1 Smp_159130.1 0.95 1.81e-08 3.39e-06
Smp_201750.1 Smp_167350.1 0.92 7.69e-07 4.43e-05
Smp_201750.1 Smp_178390.1 0.92 7.22e-07 4.24e-05
Smp_201750.1 Smp_181730.1 0.92 8.45e-07 4.74e-05
Smp_201750.1 Smp_185350.1 0.92 5.51e-07 3.51e-05
Smp_201750.1 Smp_197430.1 0.91 2.31e-06 9.64e-05
Smp_201750.1 Smp_202140.1 0.90 3.45e-06 1.00e-04
Smp_201750.1 Smp_203980.1 0.96 8.60e-09 2.06e-06
Smp_201750.1 Smp_206090.1 0.95 5.94e-08 7.59e-06