Schistosoma mansoni lncRNAs Database



This site contains the web resource described in the paper "Atlas of Schistosoma mansoni long non-coding RNAs and their expression correlation to protein-coding genes" (2018) by Elton J. R. Vasconcelos, Vinícius C. Mesel, Lucas F. daSilva, David S. Pires, Guilherme M. Lavezzo, Adriana S. A. Pereira, Murilo S. Amaral and Sergio Verjovski-Almeida, Database, Volume 2018: bay068, https://doi.org/10.1093/database/bay068.


Based on data from Vasconcelos, EJR et al., The Schistosoma mansoni genome encodes thousands of long noncoding RNAs predicted to be functional at different parasite life-cycle stages. Scientific Reports 7: 10508, 2017.


Smp_201670.1 Data


Fig. 6A for with r ≥ 0.8 or r ≤ -0.8.

Expression Fold Change Data [log2(FC)] - Download data


Gene ID Cerc 3S 24S Male Female
SmLINC00372-IBu 0 1.42 3.02 -1.83 -2.95
SmLINC01316-IBu 0 -0.35 0.57 -11.60 -4.95
SmLINC04947-IBu 0 -5.01 1.51 -1.96 -5.01
SmLINC05559-IBu 0 -0.72 2.59 -1.58 -1.98
SmLINC06836-IBu 0 5.91 8.23 0.00 0.00
Smp_201670.1 0 -0.73 1.64 -6.67 -6.67

Pearson Correlation Coefficient Data - Download data


Compared Gene Gene Pearson Correlation Value p-value B.-H. adjusted p-value
Smp_201670.1 SmLINC00372-IBu 0.91 1.73e-06 7.59e-05
Smp_201670.1 SmLINC01316-IBu 0.86 3.40e-05 6.00e-04
Smp_201670.1 SmLINC04947-IBu 0.92 6.28e-07 3.69e-05
Smp_201670.1 SmLINC05559-IBu 0.91 1.41e-06 6.55e-05
Smp_201670.1 SmLINC06836-IBu 0.92 1.05e-06 5.34e-05
Fig. S5 for with r ≥ 0.9 or r ≤ -0.9.

Expression Fold Change Data [log2(FC)] - Download data


Gene ID Cerc 3S 24S Male Female
Smp_032120.1 0 0.03 1.02 -10.65 -10.65
Smp_159070.3 0 -0.25 1.24 -10.95 -4.48
Smp_201670.1 0 -0.73 1.64 -6.67 -6.67

Pearson Correlation Coefficient Data - Download data


Compared Gene Gene Pearson Correlation Value p-value B.-H. adjusted p-value
Smp_201670.1 Smp_032120.1 0.92 6.99e-07 4.15e-05
Smp_159070.3 Smp_201670.1 0.94 1.89e-07 1.67e-05