Schistosoma mansoni lncRNAs Database



This site contains the web resource described in the paper "Atlas of Schistosoma mansoni long non-coding RNAs and their expression correlation to protein-coding genes" (2018) by Elton J. R. Vasconcelos, Vinícius C. Mesel, Lucas F. daSilva, David S. Pires, Guilherme M. Lavezzo, Adriana S. A. Pereira, Murilo S. Amaral and Sergio Verjovski-Almeida, Database, Volume 2018: bay068, https://doi.org/10.1093/database/bay068.


Based on data from Vasconcelos, EJR et al., The Schistosoma mansoni genome encodes thousands of long noncoding RNAs predicted to be functional at different parasite life-cycle stages. Scientific Reports 7: 10508, 2017.


Smp_201470.1 Data


Fig. 6A for with r ≥ 0.8 or r ≤ -0.8.

Expression Fold Change Data [log2(FC)] - Download data


Gene ID Cerc 3S 24S Male Female
SmLINC00001-IBu 0 1.12 2.22 5.99 7.57
SmLINC00004-IBu 0 0.00 0.00 9.26 10.68
SmLINC00369-IBu 0 1.32 0.40 6.04 6.28
SmLINC00525-IBu 0 -1.18 -2.31 1.77 2.53
SmLINC01084-IBu 0 -4.17 -2.32 2.88 3.57
SmLINC01122-IBu 0 0.00 0.00 6.36 6.32
SmLINC01431-IBu 0 4.28 4.33 10.35 10.82
SmLINC01432-IBu 0 0.44 1.90 4.35 4.98
SmLINC01569-IBu 0 -0.90 -0.28 4.61 4.49
SmLINC01733-IBu 0 0.89 2.09 5.78 5.68
SmLINC02084-IBu 0 2.05 2.87 9.42 9.88
SmLINC02376-IBu 0 0.00 0.00 5.89 7.89
SmLINC02394-IBu 0 0.00 0.00 9.18 10.51
SmLINC02539-IBu 0 0.00 0.00 8.89 10.77
SmLINC02577-IBu 0 0.00 1.73 7.37 9.60
SmLINC03326-IBu 0 1.89 -2.65 4.69 6.66
SmLINC03849-IBu 0 -0.25 -0.95 -4.04 -4.58
SmLINC04235-IBu 0 0.00 1.32 6.44 8.84
SmLINC04421-IBu 0 -0.40 -1.98 2.75 3.71
SmLINC04423-IBu 0 -0.15 -1.31 2.28 3.30
SmLINC04478-IBu 0 -1.64 -5.06 4.33 4.42
SmLINC04521-IBu 0 0.00 2.57 11.17 11.06
SmLINC05147-IBu 0 -2.38 -0.94 2.89 2.87
SmLINC05274-IBu 0 -0.85 -1.40 -4.98 -5.55
SmLINC05289-IBu 0 0.00 0.00 7.07 8.36
SmLINC05604-IBu 0 3.08 0.00 9.77 11.08
SmLINC06024-IBu 0 -2.97 -2.19 1.09 1.92
SmLINC06145-IBu 0 1.04 -4.71 4.38 4.76
SmLINC06239-IBu 0 -0.42 0.14 2.33 5.24
SmLINC06490-IBu 0 -0.11 0.31 -3.82 -4.89
Smp_201470.1 0 -0.82 -1.23 2.49 3.62

Pearson Correlation Coefficient Data - Download data


Compared Gene Gene Pearson Correlation Value p-value B.-H. adjusted p-value
Smp_201470.1 SmLINC00001-IBu 0.93 3.45e-07 2.43e-05
Smp_201470.1 SmLINC00004-IBu 0.93 2.60e-07 1.99e-05
Smp_201470.1 SmLINC00369-IBu 0.87 2.17e-05 4.00e-04
Smp_201470.1 SmLINC00525-IBu 0.86 3.28e-05 6.00e-04
Smp_201470.1 SmLINC01084-IBu 0.89 7.46e-06 2.00e-04
Smp_201470.1 SmLINC01122-IBu 0.82 1.00e-04 1.90e-03
Smp_201470.1 SmLINC01431-IBu 0.89 5.26e-06 1.00e-04
Smp_201470.1 SmLINC01432-IBu 0.81 2.00e-04 2.50e-03
Smp_201470.1 SmLINC01569-IBu 0.80 3.00e-04 3.10e-03
Smp_201470.1 SmLINC01733-IBu 0.83 9.44e-05 1.30e-03
Smp_201470.1 SmLINC02084-IBu 0.82 1.00e-04 1.80e-03
Smp_201470.1 SmLINC02376-IBu 0.85 5.55e-05 9.00e-04
Smp_201470.1 SmLINC02394-IBu 0.90 2.86e-06 1.00e-04
Smp_201470.1 SmLINC02539-IBu 0.83 9.25e-05 1.30e-03
Smp_201470.1 SmLINC02577-IBu 0.80 2.00e-04 2.90e-03
Smp_201470.1 SmLINC03326-IBu 0.83 9.54e-05 1.30e-03
Smp_201470.1 SmLINC03849-IBu -0.82 1.00e-04 2.00e-03
Smp_201470.1 SmLINC04235-IBu 0.86 3.09e-05 6.00e-04
Smp_201470.1 SmLINC04421-IBu 0.90 4.62e-06 1.00e-04
Smp_201470.1 SmLINC04423-IBu 0.92 7.98e-07 4.37e-05
Smp_201470.1 SmLINC04478-IBu 0.85 4.87e-05 8.00e-04
Smp_201470.1 SmLINC04521-IBu 0.86 3.04e-05 5.00e-04
Smp_201470.1 SmLINC05147-IBu 0.80 3.00e-04 3.20e-03
Smp_201470.1 SmLINC05274-IBu -0.82 1.00e-04 1.80e-03
Smp_201470.1 SmLINC05289-IBu 0.90 3.60e-06 1.00e-04
Smp_201470.1 SmLINC05604-IBu 0.89 8.45e-06 2.00e-04
Smp_201470.1 SmLINC06024-IBu 0.91 1.42e-06 6.60e-05
Smp_201470.1 SmLINC06145-IBu 0.89 7.95e-06 2.00e-04
Smp_201470.1 SmLINC06239-IBu 0.80 2.00e-04 3.00e-03
Smp_201470.1 SmLINC06490-IBu -0.85 4.11e-05 7.00e-04
Fig. S5 for with r ≥ 0.9 or r ≤ -0.9.

Expression Fold Change Data [log2(FC)] - Download data


Gene ID Cerc 3S 24S Male Female
Smp_024180.1 0 3.08 4.23 10.66 11.72
Smp_024180.2 0 -0.35 -0.80 9.03 10.04
Smp_033260.1 0 0.00 0.00 11.56 12.33
Smp_038870.2 0 -10.39 -10.39 1.75 2.41
Smp_040970.2 0 9.27 9.42 14.46 14.83
Smp_050350.3 0 7.35 7.57 12.17 13.18
Smp_052280.2 0 4.60 9.23 11.90 12.79
Smp_056460.1 0 0.00 0.00 11.24 12.03
Smp_079420.1 0 6.65 2.37 11.69 12.23
Smp_094050.1 0 0.00 6.75 11.34 12.21
Smp_131490.1 0 4.93 6.36 11.30 13.29
Smp_137000.2 0 7.58 1.98 11.35 11.89
Smp_155570.1 0 -0.46 1.69 9.73 11.27
Smp_156930.1 0 0.00 0.00 11.62 12.40
Smp_192780.1 0 1.26 4.06 9.03 10.25
Smp_194860.1 0 3.09 7.72 14.07 14.58
Smp_201470.1 0 -0.82 -1.23 2.49 3.62
Smp_201910.1 0 3.92 4.88 11.60 12.63
Smp_202610.1 0 0.45 2.30 9.93 11.71

Pearson Correlation Coefficient Data - Download data


Compared Gene Gene Pearson Correlation Value p-value B.-H. adjusted p-value
Smp_201470.1 Smp_024180.1 0.99 6.61e-13 5.14e-09
Smp_024180.2 Smp_201470.1 0.99 1.26e-13 1.86e-09
Smp_033260.1 Smp_201470.1 0.95 3.81e-08 5.62e-06
Smp_038870.2 Smp_201470.1 0.94 8.33e-08 9.55e-06
Smp_201470.1 Smp_040970.2 0.92 7.53e-07 4.37e-05
Smp_050350.3 Smp_201470.1 0.95 4.38e-08 6.17e-06
Smp_201470.1 Smp_052280.2 0.92 5.60e-07 3.55e-05
Smp_056460.1 Smp_201470.1 0.91 2.35e-06 9.76e-05
Smp_201470.1 Smp_079420.1 0.94 1.30e-07 1.30e-05
Smp_201470.1 Smp_094050.1 0.96 1.23e-08 2.62e-06
Smp_201470.1 Smp_131490.1 0.91 2.24e-06 9.43e-05
Smp_201470.1 Smp_137000.2 0.91 1.58e-06 7.39e-05
Smp_201470.1 Smp_155570.1 0.91 1.61e-06 7.46e-05
Smp_201470.1 Smp_156930.1 0.92 6.56e-07 3.97e-05
Smp_201470.1 Smp_192780.1 0.90 3.54e-06 1.00e-04
Smp_194860.1 Smp_201470.1 0.90 3.60e-06 1.00e-04
Smp_201470.1 Smp_201910.1 0.94 1.86e-07 1.66e-05
Smp_201470.1 Smp_202610.1 0.90 2.65e-06 1.00e-04