Schistosoma mansoni lncRNAs Database



This site contains the web resource described in the paper "Atlas of Schistosoma mansoni long non-coding RNAs and their expression correlation to protein-coding genes" (2018) by Elton J. R. Vasconcelos, Vinícius C. Mesel, Lucas F. daSilva, David S. Pires, Guilherme M. Lavezzo, Adriana S. A. Pereira, Murilo S. Amaral and Sergio Verjovski-Almeida, Database, Volume 2018: bay068, https://doi.org/10.1093/database/bay068.


Based on data from Vasconcelos, EJR et al., The Schistosoma mansoni genome encodes thousands of long noncoding RNAs predicted to be functional at different parasite life-cycle stages. Scientific Reports 7: 10508, 2017.


Smp_201320.1 Data


Fig. S5 for with r ≥ 0.9 or r ≤ -0.9.

Expression Fold Change Data [log2(FC)] - Download data


Gene ID Cerc 3S 24S Male Female
Smp_032990.1 0 -1.53 -9.49 -13.75 -8.21
Smp_116760.1 0 -1.93 -4.95 -12.63 -10.20
Smp_183020.1 0 -2.31 -1.58 -15.79 -15.79
Smp_183020.6 0 -2.31 -1.58 -15.79 -15.79
Smp_185350.1 0 -1.75 -2.87 -10.48 -10.48
Smp_186130.2 0 -1.40 -3.75 -10.97 -9.77
Smp_201320.1 0 -1.71 -5.69 -7.19 -7.19

Pearson Correlation Coefficient Data - Download data


Compared Gene Gene Pearson Correlation Value p-value B.-H. adjusted p-value
Smp_201320.1 Smp_032990.1 0.90 3.83e-06 1.00e-04
Smp_116760.1 Smp_201320.1 0.96 5.98e-09 1.62e-06
Smp_183020.1 Smp_201320.1 0.93 4.67e-07 3.13e-05
Smp_201320.1 Smp_183020.6 0.93 4.67e-07 3.13e-05
Smp_201320.1 Smp_185350.1 0.90 3.00e-06 1.00e-04
Smp_201320.1 Smp_186130.2 0.94 1.10e-07 1.15e-05