Schistosoma mansoni lncRNAs Database



This site contains the web resource described in the paper "Atlas of Schistosoma mansoni long non-coding RNAs and their expression correlation to protein-coding genes" (2018) by Elton J. R. Vasconcelos, Vinícius C. Mesel, Lucas F. daSilva, David S. Pires, Guilherme M. Lavezzo, Adriana S. A. Pereira, Murilo S. Amaral and Sergio Verjovski-Almeida, Database, Volume 2018: bay068, https://doi.org/10.1093/database/bay068.


Based on data from Vasconcelos, EJR et al., The Schistosoma mansoni genome encodes thousands of long noncoding RNAs predicted to be functional at different parasite life-cycle stages. Scientific Reports 7: 10508, 2017.


Smp_201270.1 Data


Fig. 6A for with r ≥ 0.8 or r ≤ -0.8.

Expression Fold Change Data [log2(FC)] - Download data


Gene ID Cerc 3S 24S Male Female
SmLINC00001-IBu 0 1.12 2.22 5.99 7.57
SmLINC00004-IBu 0 0.00 0.00 9.26 10.68
SmLINC00369-IBu 0 1.32 0.40 6.04 6.28
SmLINC01084-IBu 0 -4.17 -2.32 2.88 3.57
SmLINC01431-IBu 0 4.28 4.33 10.35 10.82
SmLINC01432-IBu 0 0.44 1.90 4.35 4.98
SmLINC02376-IBu 0 0.00 0.00 5.89 7.89
SmLINC04421-IBu 0 -0.40 -1.98 2.75 3.71
SmLINC04423-IBu 0 -0.15 -1.31 2.28 3.30
SmLINC04478-IBu 0 -1.64 -5.06 4.33 4.42
SmLINC04521-IBu 0 0.00 2.57 11.17 11.06
SmLINC05147-IBu 0 -2.38 -0.94 2.89 2.87
SmLINC05289-IBu 0 0.00 0.00 7.07 8.36
SmLINC05604-IBu 0 3.08 0.00 9.77 11.08
SmLINC06024-IBu 0 -2.97 -2.19 1.09 1.92
SmLINC06145-IBu 0 1.04 -4.71 4.38 4.76
Smp_201270.1 0 -3.12 -3.21 3.64 4.43

Pearson Correlation Coefficient Data - Download data


Compared Gene Gene Pearson Correlation Value p-value B.-H. adjusted p-value
Smp_201270.1 SmLINC00001-IBu 0.81 1.00e-04 2.20e-03
Smp_201270.1 SmLINC00004-IBu 0.81 2.00e-04 2.40e-03
Smp_201270.1 SmLINC00369-IBu 0.81 2.00e-04 2.30e-03
Smp_201270.1 SmLINC01084-IBu 0.81 2.00e-04 2.70e-03
Smp_201270.1 SmLINC01431-IBu 0.80 2.00e-04 2.80e-03
Smp_201270.1 SmLINC01432-IBu 0.86 3.55e-05 6.00e-04
Smp_201270.1 SmLINC02376-IBu 0.84 7.48e-05 1.10e-03
Smp_201270.1 SmLINC04421-IBu 0.86 2.58e-05 5.00e-04
Smp_201270.1 SmLINC04423-IBu 0.87 2.48e-05 5.00e-04
Smp_201270.1 SmLINC04478-IBu 0.83 9.06e-05 1.30e-03
Smp_201270.1 SmLINC04521-IBu 0.87 1.62e-05 3.00e-04
Smp_201270.1 SmLINC05147-IBu 0.83 1.00e-04 1.50e-03
Smp_201270.1 SmLINC05289-IBu 0.80 3.00e-04 3.20e-03
Smp_201270.1 SmLINC05604-IBu 0.83 9.61e-05 1.30e-03
Smp_201270.1 SmLINC06024-IBu 0.84 8.06e-05 1.20e-03
Smp_201270.1 SmLINC06145-IBu 0.93 3.17e-07 2.29e-05
Fig. S5 for with r ≥ 0.9 or r ≤ -0.9.

Expression Fold Change Data [log2(FC)] - Download data


Gene ID Cerc 3S 24S Male Female
Smp_024180.1 0 3.08 4.23 10.66 11.72
Smp_024180.2 0 -0.35 -0.80 9.03 10.04
Smp_156930.1 0 0.00 0.00 11.62 12.40
Smp_201270.1 0 -3.12 -3.21 3.64 4.43
Smp_201910.1 0 3.92 4.88 11.60 12.63

Pearson Correlation Coefficient Data - Download data


Compared Gene Gene Pearson Correlation Value p-value B.-H. adjusted p-value
Smp_201270.1 Smp_024180.1 0.93 3.95e-07 2.79e-05
Smp_201270.1 Smp_024180.2 0.93 3.17e-07 2.39e-05
Smp_201270.1 Smp_156930.1 0.94 8.66e-08 9.80e-06
Smp_201270.1 Smp_201910.1 0.97 7.06e-10 4.07e-07