Schistosoma mansoni lncRNAs Database



This site contains the web resource described in the paper "Atlas of Schistosoma mansoni long non-coding RNAs and their expression correlation to protein-coding genes" (2018) by Elton J. R. Vasconcelos, Vinícius C. Mesel, Lucas F. daSilva, David S. Pires, Guilherme M. Lavezzo, Adriana S. A. Pereira, Murilo S. Amaral and Sergio Verjovski-Almeida, Database, Volume 2018: bay068, https://doi.org/10.1093/database/bay068.


Based on data from Vasconcelos, EJR et al., The Schistosoma mansoni genome encodes thousands of long noncoding RNAs predicted to be functional at different parasite life-cycle stages. Scientific Reports 7: 10508, 2017.


Smp_201240.1 Data


Fig. 6A for with r ≥ 0.8 or r ≤ -0.8.

Expression Fold Change Data [log2(FC)] - Download data


Gene ID Cerc 3S 24S Male Female
SmLINC00294-IBu 0 0.33 -0.47 -2.74 -4.74
SmLINC00525-IBu 0 -1.18 -2.31 1.77 2.53
SmLINC01084-IBu 0 -4.17 -2.32 2.88 3.57
SmLINC01637-IBu 0 0.25 -0.93 -6.06 -3.40
SmLINC02026-IBu 0 -0.31 0.73 -7.72 -1.09
SmLINC04387-IBu 0 -2.15 -6.76 0.33 0.40
SmLINC04421-IBu 0 -0.40 -1.98 2.75 3.71
SmLINC05716-IBu 0 0.29 -1.48 -4.28 -5.77
SmLINC06024-IBu 0 -2.97 -2.19 1.09 1.92
SmLINC06490-IBu 0 -0.11 0.31 -3.82 -4.89
Smp_201240.1 0 0.33 1.35 -3.56 -3.77

Pearson Correlation Coefficient Data - Download data


Compared Gene Gene Pearson Correlation Value p-value B.-H. adjusted p-value
Smp_201240.1 SmLINC00294-IBu 0.89 8.62e-06 2.00e-04
Smp_201240.1 SmLINC00525-IBu -0.82 1.00e-04 1.90e-03
Smp_201240.1 SmLINC01084-IBu -0.82 1.00e-04 1.70e-03
Smp_201240.1 SmLINC01637-IBu 0.84 6.31e-05 1.00e-03
Smp_201240.1 SmLINC02026-IBu 0.81 2.00e-04 2.50e-03
Smp_201240.1 SmLINC04387-IBu -0.80 2.00e-04 2.80e-03
Smp_201240.1 SmLINC04421-IBu -0.80 3.00e-04 3.40e-03
Smp_201240.1 SmLINC05716-IBu 0.82 1.00e-04 2.10e-03
Smp_201240.1 SmLINC06024-IBu -0.85 4.36e-05 7.00e-04
Smp_201240.1 SmLINC06490-IBu 0.86 3.58e-05 6.00e-04
Fig. S5 for with r ≥ 0.9 or r ≤ -0.9.

Expression Fold Change Data [log2(FC)] - Download data


Gene ID Cerc 3S 24S Male Female
Smp_086600.1 0 -0.12 -0.81 -6.58 -10.32
Smp_109340.1 0 1.47 0.69 -10.22 -10.22
Smp_184180.1 0 -0.01 -0.17 -13.99 -13.99
Smp_201240.1 0 0.33 1.35 -3.56 -3.77
Smp_212510.1 0 -0.05 -0.36 -7.08 -10.79

Pearson Correlation Coefficient Data - Download data


Compared Gene Gene Pearson Correlation Value p-value B.-H. adjusted p-value
Smp_086600.1 Smp_201240.1 0.97 8.67e-10 4.65e-07
Smp_109340.1 Smp_201240.1 0.92 7.60e-07 4.40e-05
Smp_184180.1 Smp_201240.1 0.95 2.65e-08 4.39e-06
Smp_212510.1 Smp_201240.1 0.91 1.37e-06 6.66e-05