Schistosoma mansoni lncRNAs Database



This site contains the web resource described in the paper "Atlas of Schistosoma mansoni long non-coding RNAs and their expression correlation to protein-coding genes" (2018) by Elton J. R. Vasconcelos, Vinícius C. Mesel, Lucas F. daSilva, David S. Pires, Guilherme M. Lavezzo, Adriana S. A. Pereira, Murilo S. Amaral and Sergio Verjovski-Almeida, Database, Volume 2018: bay068, https://doi.org/10.1093/database/bay068.


Based on data from Vasconcelos, EJR et al., The Schistosoma mansoni genome encodes thousands of long noncoding RNAs predicted to be functional at different parasite life-cycle stages. Scientific Reports 7: 10508, 2017.


Smp_201100.1 Data


Fig. 6A for with r ≥ 0.8 or r ≤ -0.8.

Expression Fold Change Data [log2(FC)] - Download data


Gene ID Cerc 3S 24S Male Female
SmLINC00001-IBu 0 1.12 2.22 5.99 7.57
SmLINC00004-IBu 0 0.00 0.00 9.26 10.68
SmLINC00294-IBu 0 0.33 -0.47 -2.74 -4.74
SmLINC00369-IBu 0 1.32 0.40 6.04 6.28
SmLINC00525-IBu 0 -1.18 -2.31 1.77 2.53
SmLINC01084-IBu 0 -4.17 -2.32 2.88 3.57
SmLINC01431-IBu 0 4.28 4.33 10.35 10.82
SmLINC01432-IBu 0 0.44 1.90 4.35 4.98
SmLINC01520-IBu 0 0.00 0.00 7.35 9.60
SmLINC02029-IBu 0 0.00 0.00 6.82 9.29
SmLINC02084-IBu 0 2.05 2.87 9.42 9.88
SmLINC02376-IBu 0 0.00 0.00 5.89 7.89
SmLINC02394-IBu 0 0.00 0.00 9.18 10.51
SmLINC02539-IBu 0 0.00 0.00 8.89 10.77
SmLINC02540-IBu 0 0.00 0.00 8.87 10.81
SmLINC02577-IBu 0 0.00 1.73 7.37 9.60
SmLINC02783-IBu 0 0.00 3.67 6.24 9.23
SmLINC03326-IBu 0 1.89 -2.65 4.69 6.66
SmLINC03658-IBu 0 3.74 4.41 6.00 8.36
SmLINC03849-IBu 0 -0.25 -0.95 -4.04 -4.58
SmLINC04235-IBu 0 0.00 1.32 6.44 8.84
SmLINC04421-IBu 0 -0.40 -1.98 2.75 3.71
SmLINC04423-IBu 0 -0.15 -1.31 2.28 3.30
SmLINC04478-IBu 0 -1.64 -5.06 4.33 4.42
SmLINC04521-IBu 0 0.00 2.57 11.17 11.06
SmLINC04627-IBu 0 0.00 0.00 6.80 10.25
SmLINC05274-IBu 0 -0.85 -1.40 -4.98 -5.55
SmLINC05289-IBu 0 0.00 0.00 7.07 8.36
SmLINC05404-IBu 0 -1.83 -1.83 1.64 4.45
SmLINC05604-IBu 0 3.08 0.00 9.77 11.08
SmLINC05684-IBu 0 0.98 2.20 5.42 8.30
SmLINC06024-IBu 0 -2.97 -2.19 1.09 1.92
SmLINC06145-IBu 0 1.04 -4.71 4.38 4.76
SmLINC06239-IBu 0 -0.42 0.14 2.33 5.24
SmLINC06490-IBu 0 -0.11 0.31 -3.82 -4.89
Smp_201100.1 0 -0.37 -1.01 2.37 3.82

Pearson Correlation Coefficient Data - Download data


Compared Gene Gene Pearson Correlation Value p-value B.-H. adjusted p-value
Smp_201100.1 SmLINC00001-IBu 0.95 1.70e-08 3.06e-06
Smp_201100.1 SmLINC00004-IBu 0.96 3.68e-09 1.10e-06
Smp_201100.1 SmLINC00294-IBu -0.80 3.00e-04 3.30e-03
Smp_201100.1 SmLINC00369-IBu 0.82 1.00e-04 1.70e-03
Smp_201100.1 SmLINC00525-IBu 0.88 9.66e-06 2.00e-04
Smp_201100.1 SmLINC01084-IBu 0.89 6.41e-06 1.00e-04
Smp_201100.1 SmLINC01431-IBu 0.87 1.94e-05 4.00e-04
Smp_201100.1 SmLINC01432-IBu 0.84 6.29e-05 1.00e-03
Smp_201100.1 SmLINC01520-IBu 0.85 4.25e-05 7.00e-04
Smp_201100.1 SmLINC02029-IBu 0.87 1.57e-05 3.00e-04
Smp_201100.1 SmLINC02084-IBu 0.81 2.00e-04 2.60e-03
Smp_201100.1 SmLINC02376-IBu 0.89 8.36e-06 2.00e-04
Smp_201100.1 SmLINC02394-IBu 0.90 3.58e-06 1.00e-04
Smp_201100.1 SmLINC02539-IBu 0.89 5.81e-06 1.00e-04
Smp_201100.1 SmLINC02540-IBu 0.82 1.00e-04 2.10e-03
Smp_201100.1 SmLINC02577-IBu 0.87 2.24e-05 4.00e-04
Smp_201100.1 SmLINC02783-IBu 0.82 1.00e-04 2.10e-03
Smp_201100.1 SmLINC03326-IBu 0.86 3.64e-05 6.00e-04
Smp_201100.1 SmLINC03658-IBu 0.82 1.00e-04 2.00e-03
Smp_201100.1 SmLINC03849-IBu -0.81 1.00e-04 2.10e-03
Smp_201100.1 SmLINC04235-IBu 0.93 3.73e-07 2.56e-05
Smp_201100.1 SmLINC04421-IBu 0.93 3.02e-07 2.21e-05
Smp_201100.1 SmLINC04423-IBu 0.95 4.99e-08 6.37e-06
Smp_201100.1 SmLINC04478-IBu 0.84 8.28e-05 1.20e-03
Smp_201100.1 SmLINC04521-IBu 0.81 2.00e-04 2.30e-03
Smp_201100.1 SmLINC04627-IBu 0.83 9.09e-05 1.30e-03
Smp_201100.1 SmLINC05274-IBu -0.82 1.00e-04 2.00e-03
Smp_201100.1 SmLINC05289-IBu 0.93 4.74e-07 3.03e-05
Smp_201100.1 SmLINC05404-IBu 0.82 1.00e-04 2.00e-03
Smp_201100.1 SmLINC05604-IBu 0.94 9.33e-08 9.78e-06
Smp_201100.1 SmLINC05684-IBu 0.85 5.33e-05 8.00e-04
Smp_201100.1 SmLINC06024-IBu 0.93 3.85e-07 2.62e-05
Smp_201100.1 SmLINC06145-IBu 0.84 8.08e-05 1.20e-03
Smp_201100.1 SmLINC06239-IBu 0.88 1.35e-05 3.00e-04
Smp_201100.1 SmLINC06490-IBu -0.85 5.38e-05 9.00e-04
Fig. S5 for with r ≥ 0.9 or r ≤ -0.9.

Expression Fold Change Data [log2(FC)] - Download data


Gene ID Cerc 3S 24S Male Female
Smp_004780.3 0 8.47 8.56 12.10 13.78
Smp_016490.2 0 1.32 2.33 8.95 11.08
Smp_024180.1 0 3.08 4.23 10.66 11.72
Smp_024180.2 0 -0.35 -0.80 9.03 10.04
Smp_028870.1 0 1.64 3.08 9.06 11.09
Smp_033260.1 0 0.00 0.00 11.56 12.33
Smp_038870.2 0 -10.39 -10.39 1.75 2.41
Smp_050350.3 0 7.35 7.57 12.17 13.18
Smp_052280.2 0 4.60 9.23 11.90 12.79
Smp_056460.1 0 0.00 0.00 11.24 12.03
Smp_079420.1 0 6.65 2.37 11.69 12.23
Smp_085180.1 0 1.48 5.09 10.70 12.92
Smp_086450.3 0 0.00 0.00 9.98 12.32
Smp_094050.1 0 0.00 6.75 11.34 12.21
Smp_102780.1 0 3.53 4.72 9.81 11.88
Smp_130100.1 0 -1.34 3.61 11.71 14.01
Smp_131490.1 0 4.93 6.36 11.30 13.29
Smp_137000.2 0 7.58 1.98 11.35 11.89
Smp_137810.1 0 6.00 3.74 9.29 10.87
Smp_140720.1 0 4.90 5.49 10.97 12.76
Smp_155570.1 0 -0.46 1.69 9.73 11.27
Smp_156930.1 0 0.00 0.00 11.62 12.40
Smp_159650.1 0 4.04 4.18 8.26 10.40
Smp_162320.1 0 0.58 2.27 8.70 11.23
Smp_164320.1 0 0.97 4.76 9.93 12.08
Smp_192780.1 0 1.26 4.06 9.03 10.25
Smp_201100.1 0 -0.37 -1.01 2.37 3.82
Smp_201910.1 0 3.92 4.88 11.60 12.63
Smp_202610.1 0 0.45 2.30 9.93 11.71
Smp_203030.1 0 2.55 0.41 8.36 10.39

Pearson Correlation Coefficient Data - Download data


Compared Gene Gene Pearson Correlation Value p-value B.-H. adjusted p-value
Smp_004780.3 Smp_201100.1 0.93 3.02e-07 2.31e-05
Smp_016490.2 Smp_201100.1 0.93 2.08e-07 1.79e-05
Smp_024180.1 Smp_201100.1 0.96 4.92e-09 1.42e-06
Smp_024180.2 Smp_201100.1 0.97 1.12e-09 5.50e-07
Smp_201100.1 Smp_028870.1 0.94 1.56e-07 1.46e-05
Smp_033260.1 Smp_201100.1 0.95 2.74e-08 4.49e-06
Smp_038870.2 Smp_201100.1 0.92 9.10e-07 4.99e-05
Smp_050350.3 Smp_201100.1 0.96 3.78e-09 1.20e-06
Smp_201100.1 Smp_052280.2 0.93 5.06e-07 3.31e-05
Smp_056460.1 Smp_201100.1 0.91 1.27e-06 6.31e-05
Smp_201100.1 Smp_079420.1 0.92 8.34e-07 4.69e-05
Smp_085180.1 Smp_201100.1 0.91 2.16e-06 9.18e-05
Smp_086450.3 Smp_201100.1 0.90 3.90e-06 1.00e-04
Smp_094050.1 Smp_201100.1 0.95 1.61e-08 3.13e-06
Smp_201100.1 Smp_102780.1 0.93 3.77e-07 2.70e-05
Smp_201100.1 Smp_130100.1 0.93 3.50e-07 2.56e-05
Smp_201100.1 Smp_131490.1 0.93 2.87e-07 2.23e-05
Smp_201100.1 Smp_137000.2 0.90 2.69e-06 1.00e-04
Smp_137810.1 Smp_201100.1 0.91 1.75e-06 7.94e-05
Smp_140720.1 Smp_201100.1 0.93 1.98e-07 1.72e-05
Smp_155570.1 Smp_201100.1 0.95 5.28e-08 7.01e-06
Smp_201100.1 Smp_156930.1 0.92 1.01e-06 5.40e-05
Smp_159650.1 Smp_201100.1 0.94 1.43e-07 1.38e-05
Smp_162320.1 Smp_201100.1 0.90 4.43e-06 1.00e-04
Smp_201100.1 Smp_164320.1 0.90 2.97e-06 1.00e-04
Smp_201100.1 Smp_192780.1 0.92 5.33e-07 3.43e-05
Smp_201910.1 Smp_201100.1 0.95 4.26e-08 6.06e-06
Smp_201100.1 Smp_202610.1 0.94 1.19e-07 1.21e-05
Smp_203030.1 Smp_201100.1 0.95 5.04e-08 6.79e-06