Schistosoma mansoni lncRNAs Database



This site contains the web resource described in the paper "Atlas of Schistosoma mansoni long non-coding RNAs and their expression correlation to protein-coding genes" (2018) by Elton J. R. Vasconcelos, Vinícius C. Mesel, Lucas F. daSilva, David S. Pires, Guilherme M. Lavezzo, Adriana S. A. Pereira, Murilo S. Amaral and Sergio Verjovski-Almeida, Database, Volume 2018: bay068, https://doi.org/10.1093/database/bay068.


Based on data from Vasconcelos, EJR et al., The Schistosoma mansoni genome encodes thousands of long noncoding RNAs predicted to be functional at different parasite life-cycle stages. Scientific Reports 7: 10508, 2017.


Smp_201000.1 Data


Fig. 7A S3 for with r ≥ 0.5 or r ≤ -0.5.

Expression Fold Change Data [log2(FC)] - Download data


Gene ID Cerc 3S 24S Male Female
SmLINC00784-IBu 0 0.40 -3.11 -2.84 -3.25
SmLINC00787-IBu 0 1.80 -4.72 -2.61 -3.96
Smp_201000.1 0 6.84 0.00 2.13 2.38

Pearson Correlation Coefficient Data - Download data


Compared Gene Gene Pearson Correlation Value p-value B.-H. adjusted p-value
Smp_201000.1 SmLINC00784-IBu 0.73 1.70e-03 9.40e-03
Smp_201000.1 SmLINC00787-IBu 0.63 1.13e-02 3.80e-02
Fig. 6A for with r ≥ 0.8 or r ≤ -0.8.

Expression Fold Change Data [log2(FC)] - Download data


Gene ID Cerc 3S 24S Male Female
SmLINC00026-IBu 0 1.41 -0.25 -3.45 -4.99
SmLINC00037-IBu 0 0.38 -1.52 -5.66 -6.88
SmLINC00133-IBu 0 0.41 -1.72 -5.79 -6.76
SmLINC00893-IBu 0 1.08 -1.15 -3.04 -4.37
SmLINC01462-IBu 0 0.69 -0.90 -3.10 -4.62
SmLINC01486-IBu 0 0.59 -1.26 -4.75 -5.22
SmLINC03056-IBu 0 1.41 -1.34 -4.42 -9.40
SmLINC03362-IBu 0 3.01 -2.44 -3.94 -3.85
SmLINC03406-IBu 0 4.88 2.89 -1.93 3.48
SmLINC04075-IBu 0 0.82 -1.03 -4.58 -4.73
SmLINC04106-IBu 0 1.60 -0.86 -5.26 -10.78
SmLINC04129-IBu 0 2.02 -0.05 -5.02 -3.35
SmLINC04144-IBu 0 2.82 -0.04 -0.46 -2.35
SmLINC04178-IBu 0 2.31 -5.42 -4.19 -7.97
SmLINC04271-IBu 0 0.79 -0.67 -2.59 -4.22
SmLINC04940-IBu 0 3.94 -4.79 -4.79 -4.79
SmLINC05178-IBu 0 3.85 -0.08 -1.72 -5.31
SmLINC05716-IBu 0 0.29 -1.48 -4.28 -5.77
SmLINC05840-IBu 0 1.40 -1.20 -2.41 -3.85
SmLINC05887-IBu 0 1.98 -0.51 -2.69 -3.80
SmLINC05888-IBu 0 4.50 1.82 -0.36 -2.39
SmLINC06138-IBu 0 2.13 -1.25 -2.27 -2.28
SmLINC06210-IBu 0 3.36 -0.61 -1.90 -1.98
SmLINC06436-IBu 0 7.76 4.53 3.89 -2.06
SmLINC06669-IBu 0 8.70 4.94 4.70 6.60
Smp_201000.1 0 6.84 0.00 2.13 2.38

Pearson Correlation Coefficient Data - Download data


Compared Gene Gene Pearson Correlation Value p-value B.-H. adjusted p-value
Smp_201000.1 SmLINC00026-IBu 0.88 1.11e-05 2.00e-04
Smp_201000.1 SmLINC00037-IBu 0.85 5.59e-05 9.00e-04
Smp_201000.1 SmLINC00133-IBu 0.87 2.44e-05 5.00e-04
Smp_201000.1 SmLINC00893-IBu 0.93 3.99e-07 2.68e-05
Smp_201000.1 SmLINC01462-IBu 0.87 1.83e-05 4.00e-04
Smp_201000.1 SmLINC01486-IBu 0.88 1.04e-05 2.00e-04
Smp_201000.1 SmLINC03056-IBu 0.92 8.87e-07 4.71e-05
Smp_201000.1 SmLINC03362-IBu 0.96 2.85e-09 9.32e-07
Smp_201000.1 SmLINC03406-IBu 0.85 5.88e-05 9.00e-04
Smp_201000.1 SmLINC04075-IBu 0.90 4.35e-06 1.00e-04
Smp_201000.1 SmLINC04106-IBu 0.89 7.16e-06 2.00e-04
Smp_201000.1 SmLINC04129-IBu 0.89 5.04e-06 1.00e-04
Smp_201000.1 SmLINC04144-IBu 0.83 1.00e-04 1.60e-03
Smp_201000.1 SmLINC04178-IBu 0.98 6.79e-11 8.34e-08
Smp_201000.1 SmLINC04271-IBu 0.86 3.87e-05 7.00e-04
Smp_201000.1 SmLINC04940-IBu 0.98 9.15e-12 2.36e-08
Smp_201000.1 SmLINC05178-IBu 0.93 3.57e-07 2.48e-05
Smp_201000.1 SmLINC05716-IBu 0.80 2.00e-04 2.90e-03
Smp_201000.1 SmLINC05840-IBu 0.89 8.39e-06 2.00e-04
Smp_201000.1 SmLINC05887-IBu 0.94 8.70e-08 9.33e-06
Smp_201000.1 SmLINC05888-IBu 0.97 3.50e-10 2.39e-07
Smp_201000.1 SmLINC06138-IBu 0.92 5.27e-07 3.26e-05
Smp_201000.1 SmLINC06210-IBu 0.96 8.93e-09 1.98e-06
Smp_201000.1 SmLINC06436-IBu 0.82 1.00e-04 1.80e-03
Smp_201000.1 SmLINC06669-IBu 0.97 1.60e-09 6.39e-07
Fig. S5 for with r ≥ 0.9 or r ≤ -0.9.

Expression Fold Change Data [log2(FC)] - Download data


Gene ID Cerc 3S 24S Male Female
Smp_185680.1 0 1.75 -5.39 -10.59 -10.59
Smp_185830.1 0 1.64 -1.15 -9.24 -11.35
Smp_201000.1 0 6.84 0.00 2.13 2.38

Pearson Correlation Coefficient Data - Download data


Compared Gene Gene Pearson Correlation Value p-value B.-H. adjusted p-value
Smp_185680.1 Smp_201000.1 0.91 2.05e-06 8.87e-05
Smp_185830.1 Smp_201000.1 0.92 6.32e-07 3.87e-05