Schistosoma mansoni lncRNAs Database



This site contains the web resource described in the paper "Atlas of Schistosoma mansoni long non-coding RNAs and their expression correlation to protein-coding genes" (2018) by Elton J. R. Vasconcelos, Vinícius C. Mesel, Lucas F. daSilva, David S. Pires, Guilherme M. Lavezzo, Adriana S. A. Pereira, Murilo S. Amaral and Sergio Verjovski-Almeida, Database, Volume 2018: bay068, https://doi.org/10.1093/database/bay068.


Based on data from Vasconcelos, EJR et al., The Schistosoma mansoni genome encodes thousands of long noncoding RNAs predicted to be functional at different parasite life-cycle stages. Scientific Reports 7: 10508, 2017.


Smp_200970.1 Data


Fig. 6A for with r ≥ 0.8 or r ≤ -0.8.

Expression Fold Change Data [log2(FC)] - Download data


Gene ID Cerc 3S 24S Male Female
SmLINC00037-IBu 0 0.38 -1.52 -5.66 -6.88
SmLINC00133-IBu 0 0.41 -1.72 -5.79 -6.76
SmLINC00282-IBu 0 0.07 -1.80 -4.82 -4.14
SmLINC01486-IBu 0 0.59 -1.26 -4.75 -5.22
SmLINC01637-IBu 0 0.25 -0.93 -6.06 -3.40
SmLINC03848-IBu 0 -0.05 -2.68 -3.98 -4.70
SmLINC03930-IBu 0 -0.18 -2.11 -8.92 -4.64
SmLINC04075-IBu 0 0.82 -1.03 -4.58 -4.73
SmLINC05716-IBu 0 0.29 -1.48 -4.28 -5.77
SmLINC05720-IBu 0 0.01 -1.80 -4.98 -8.04
SmLINC06535-IBu 0 -0.47 -1.74 -4.21 -5.43
Smp_200970.1 0 0.13 -1.19 -4.97 -7.63

Pearson Correlation Coefficient Data - Download data


Compared Gene Gene Pearson Correlation Value p-value B.-H. adjusted p-value
Smp_200970.1 SmLINC00037-IBu 0.85 5.75e-05 9.00e-04
Smp_200970.1 SmLINC00133-IBu 0.86 2.65e-05 5.00e-04
Smp_200970.1 SmLINC00282-IBu 0.85 4.97e-05 8.00e-04
Smp_200970.1 SmLINC01486-IBu 0.89 7.62e-06 2.00e-04
Smp_200970.1 SmLINC01637-IBu 0.82 1.00e-04 2.10e-03
Smp_200970.1 SmLINC03848-IBu 0.82 1.00e-04 1.80e-03
Smp_200970.1 SmLINC03930-IBu 0.83 1.00e-04 1.50e-03
Smp_200970.1 SmLINC04075-IBu 0.81 2.00e-04 2.30e-03
Smp_200970.1 SmLINC05716-IBu 0.81 2.00e-04 2.40e-03
Smp_200970.1 SmLINC05720-IBu 0.83 1.00e-04 1.40e-03
Smp_200970.1 SmLINC06535-IBu 0.93 4.93e-07 3.11e-05
Fig. S5 for with r ≥ 0.9 or r ≤ -0.9.

Expression Fold Change Data [log2(FC)] - Download data


Gene ID Cerc 3S 24S Male Female
Smp_032970.1 0 -0.24 -2.98 -11.57 -7.79
Smp_035200.3 0 -0.02 -1.98 -15.09 -15.09
Smp_111640.1 0 0.66 -0.66 -11.28 -11.28
Smp_182090.1 0 0.34 -10.52 -4.07 -5.68
Smp_200970.1 0 0.13 -1.19 -4.97 -7.63

Pearson Correlation Coefficient Data - Download data


Compared Gene Gene Pearson Correlation Value p-value B.-H. adjusted p-value
Smp_032970.1 Smp_200970.1 0.92 7.63e-07 4.41e-05
Smp_200970.1 Smp_035200.3 0.90 3.55e-06 1.00e-04
Smp_111640.1 Smp_200970.1 0.90 4.82e-06 1.00e-04
Smp_182090.1 Smp_200970.1 0.92 9.87e-07 5.28e-05