Schistosoma mansoni lncRNAs Database



This site contains the web resource described in the paper "Atlas of Schistosoma mansoni long non-coding RNAs and their expression correlation to protein-coding genes" (2018) by Elton J. R. Vasconcelos, Vinícius C. Mesel, Lucas F. daSilva, David S. Pires, Guilherme M. Lavezzo, Adriana S. A. Pereira, Murilo S. Amaral and Sergio Verjovski-Almeida, Database, Volume 2018: bay068, https://doi.org/10.1093/database/bay068.


Based on data from Vasconcelos, EJR et al., The Schistosoma mansoni genome encodes thousands of long noncoding RNAs predicted to be functional at different parasite life-cycle stages. Scientific Reports 7: 10508, 2017.


Smp_200930.1 Data


Fig. 6A for with r ≥ 0.8 or r ≤ -0.8.

Expression Fold Change Data [log2(FC)] - Download data


Gene ID Cerc 3S 24S Male Female
SmLINC00369-IBu 0 1.32 0.40 6.04 6.28
SmLINC00484-IBu 0 -0.02 2.64 6.82 5.24
SmLINC00633-IBu 0 1.89 0.00 7.59 7.46
SmLINC01122-IBu 0 0.00 0.00 6.36 6.32
SmLINC01431-IBu 0 4.28 4.33 10.35 10.82
SmLINC01538-IBu 0 0.00 3.62 10.85 10.43
SmLINC01569-IBu 0 -0.90 -0.28 4.61 4.49
SmLINC01733-IBu 0 0.89 2.09 5.78 5.68
SmLINC01746-IBu 0 -3.80 -0.66 2.43 2.13
SmLINC02084-IBu 0 2.05 2.87 9.42 9.88
SmLINC03309-IBu 0 -0.28 0.72 5.03 4.47
SmLINC03542-IBu 0 3.10 -2.22 9.17 7.75
SmLINC03693-IBu 0 0.04 0.11 4.65 4.21
SmLINC04478-IBu 0 -1.64 -5.06 4.33 4.42
SmLINC04521-IBu 0 0.00 2.57 11.17 11.06
SmLINC04663-IBu 0 -2.56 -3.27 2.68 1.54
SmLINC05147-IBu 0 -2.38 -0.94 2.89 2.87
SmLINC05258-IBu 0 0.71 -0.55 3.56 3.34
SmLINC06145-IBu 0 1.04 -4.71 4.38 4.76
SmLINC06221-IBu 0 2.16 3.44 6.39 5.80
SmLINC06449-IBu 0 2.33 4.31 7.30 6.63
SmLINC06543-IBu 0 -0.52 0.39 3.89 3.37
Smp_200930.1 0 4.52 2.67 6.31 6.53

Pearson Correlation Coefficient Data - Download data


Compared Gene Gene Pearson Correlation Value p-value B.-H. adjusted p-value
Smp_200930.1 SmLINC00369-IBu 0.91 2.38e-06 9.53e-05
Smp_200930.1 SmLINC00484-IBu 0.80 3.00e-04 3.20e-03
Smp_200930.1 SmLINC00633-IBu 0.80 3.00e-04 3.40e-03
Smp_200930.1 SmLINC01122-IBu 0.84 7.26e-05 1.10e-03
Smp_200930.1 SmLINC01431-IBu 0.85 4.02e-05 7.00e-04
Smp_200930.1 SmLINC01538-IBu 0.84 6.55e-05 1.00e-03
Smp_200930.1 SmLINC01569-IBu 0.82 1.00e-04 1.70e-03
Smp_200930.1 SmLINC01733-IBu 0.89 6.57e-06 1.00e-04
Smp_200930.1 SmLINC01746-IBu 0.83 1.00e-04 1.60e-03
Smp_200930.1 SmLINC02084-IBu 0.81 2.00e-04 2.50e-03
Smp_200930.1 SmLINC03309-IBu 0.82 1.00e-04 2.00e-03
Smp_200930.1 SmLINC03542-IBu 0.80 2.00e-04 2.80e-03
Smp_200930.1 SmLINC03693-IBu 0.82 1.00e-04 2.00e-03
Smp_200930.1 SmLINC04478-IBu 0.82 1.00e-04 1.70e-03
Smp_200930.1 SmLINC04521-IBu 0.92 1.17e-06 5.75e-05
Smp_200930.1 SmLINC04663-IBu 0.81 2.00e-04 2.70e-03
Smp_200930.1 SmLINC05147-IBu 0.84 6.07e-05 9.00e-04
Smp_200930.1 SmLINC05258-IBu 0.82 1.00e-04 2.00e-03
Smp_200930.1 SmLINC06145-IBu 0.91 1.81e-06 7.84e-05
Smp_200930.1 SmLINC06221-IBu 0.83 1.00e-04 1.60e-03
Smp_200930.1 SmLINC06449-IBu 0.87 1.59e-05 3.00e-04
Smp_200930.1 SmLINC06543-IBu 0.80 3.00e-04 3.20e-03
Fig. S5 for with r ≥ 0.9 or r ≤ -0.9.

Expression Fold Change Data [log2(FC)] - Download data


Gene ID Cerc 3S 24S Male Female
Smp_079420.1 0 6.65 2.37 11.69 12.23
Smp_159070.2 0 -0.62 -11.03 1.85 1.97
Smp_200930.1 0 4.52 2.67 6.31 6.53

Pearson Correlation Coefficient Data - Download data


Compared Gene Gene Pearson Correlation Value p-value B.-H. adjusted p-value
Smp_200930.1 Smp_079420.1 0.9 4.64e-06 1.00e-04
Smp_159070.2 Smp_200930.1 0.9 3.65e-06 1.00e-04