Schistosoma mansoni lncRNAs Database



This site contains the web resource described in the paper "Atlas of Schistosoma mansoni long non-coding RNAs and their expression correlation to protein-coding genes" (2018) by Elton J. R. Vasconcelos, Vinícius C. Mesel, Lucas F. daSilva, David S. Pires, Guilherme M. Lavezzo, Adriana S. A. Pereira, Murilo S. Amaral and Sergio Verjovski-Almeida, Database, Volume 2018: bay068, https://doi.org/10.1093/database/bay068.


Based on data from Vasconcelos, EJR et al., The Schistosoma mansoni genome encodes thousands of long noncoding RNAs predicted to be functional at different parasite life-cycle stages. Scientific Reports 7: 10508, 2017.


Smp_200900.1 Data


Fig. 6A for with r ≥ 0.8 or r ≤ -0.8.

Expression Fold Change Data [log2(FC)] - Download data


Gene ID Cerc 3S 24S Male Female
SmLINC00037-IBu 0 0.38 -1.52 -5.66 -6.88
SmLINC00133-IBu 0 0.41 -1.72 -5.79 -6.76
SmLINC00282-IBu 0 0.07 -1.80 -4.82 -4.14
SmLINC00784-IBu 0 0.40 -3.11 -2.84 -3.25
SmLINC00893-IBu 0 1.08 -1.15 -3.04 -4.37
SmLINC01462-IBu 0 0.69 -0.90 -3.10 -4.62
SmLINC01486-IBu 0 0.59 -1.26 -4.75 -5.22
SmLINC01637-IBu 0 0.25 -0.93 -6.06 -3.40
SmLINC03056-IBu 0 1.41 -1.34 -4.42 -9.40
SmLINC03362-IBu 0 3.01 -2.44 -3.94 -3.85
SmLINC03848-IBu 0 -0.05 -2.68 -3.98 -4.70
SmLINC03930-IBu 0 -0.18 -2.11 -8.92 -4.64
SmLINC04075-IBu 0 0.82 -1.03 -4.58 -4.73
SmLINC04106-IBu 0 1.60 -0.86 -5.26 -10.78
SmLINC04178-IBu 0 2.31 -5.42 -4.19 -7.97
SmLINC04366-IBu 0 0.53 -1.17 -2.70 -4.36
SmLINC04940-IBu 0 3.94 -4.79 -4.79 -4.79
SmLINC05716-IBu 0 0.29 -1.48 -4.28 -5.77
SmLINC05888-IBu 0 4.50 1.82 -0.36 -2.39
SmLINC06210-IBu 0 3.36 -0.61 -1.90 -1.98
Smp_200900.1 0 1.23 -4.76 -2.64 -1.93

Pearson Correlation Coefficient Data - Download data


Compared Gene Gene Pearson Correlation Value p-value B.-H. adjusted p-value
Smp_200900.1 SmLINC00037-IBu 0.88 1.03e-05 2.00e-04
Smp_200900.1 SmLINC00133-IBu 0.89 5.50e-06 1.00e-04
Smp_200900.1 SmLINC00282-IBu 0.87 1.52e-05 3.00e-04
Smp_200900.1 SmLINC00784-IBu 0.90 4.83e-06 1.00e-04
Smp_200900.1 SmLINC00893-IBu 0.82 1.00e-04 1.90e-03
Smp_200900.1 SmLINC01462-IBu 0.84 6.01e-05 9.00e-04
Smp_200900.1 SmLINC01486-IBu 0.87 2.23e-05 4.00e-04
Smp_200900.1 SmLINC01637-IBu 0.83 9.82e-05 1.30e-03
Smp_200900.1 SmLINC03056-IBu 0.93 4.75e-07 3.03e-05
Smp_200900.1 SmLINC03362-IBu 0.94 1.39e-07 1.28e-05
Smp_200900.1 SmLINC03848-IBu 0.92 6.68e-07 3.86e-05
Smp_200900.1 SmLINC03930-IBu 0.85 4.72e-05 8.00e-04
Smp_200900.1 SmLINC04075-IBu 0.85 4.28e-05 7.00e-04
Smp_200900.1 SmLINC04106-IBu 0.85 5.70e-05 9.00e-04
Smp_200900.1 SmLINC04178-IBu 0.82 1.00e-04 2.10e-03
Smp_200900.1 SmLINC04366-IBu 0.90 3.67e-06 1.00e-04
Smp_200900.1 SmLINC04940-IBu 0.86 2.99e-05 5.00e-04
Smp_200900.1 SmLINC05716-IBu 0.85 4.82e-05 8.00e-04
Smp_200900.1 SmLINC05888-IBu 0.82 1.00e-04 1.80e-03
Smp_200900.1 SmLINC06210-IBu 0.92 1.15e-06 5.68e-05
Fig. S5 for with r ≥ 0.9 or r ≤ -0.9.

Expression Fold Change Data [log2(FC)] - Download data


Gene ID Cerc 3S 24S Male Female
Smp_032320.1 0 1.14 -10.97 -10.97 -10.97
Smp_111640.1 0 0.66 -0.66 -11.28 -11.28
Smp_112090.1 0 0.15 -7.44 -10.10 -10.10
Smp_185680.1 0 1.75 -5.39 -10.59 -10.59
Smp_185830.1 0 1.64 -1.15 -9.24 -11.35
Smp_200900.1 0 1.23 -4.76 -2.64 -1.93

Pearson Correlation Coefficient Data - Download data


Compared Gene Gene Pearson Correlation Value p-value B.-H. adjusted p-value
Smp_032320.1 Smp_200900.1 0.97 3.65e-10 2.67e-07
Smp_111640.1 Smp_200900.1 0.90 3.04e-06 1.00e-04
Smp_112090.1 Smp_200900.1 0.95 2.35e-08 4.05e-06
Smp_185680.1 Smp_200900.1 0.94 1.52e-07 1.44e-05
Smp_185830.1 Smp_200900.1 0.94 1.65e-07 1.52e-05