Schistosoma mansoni lncRNAs Database



This site contains the web resource described in the paper "Atlas of Schistosoma mansoni long non-coding RNAs and their expression correlation to protein-coding genes" (2018) by Elton J. R. Vasconcelos, Vinícius C. Mesel, Lucas F. daSilva, David S. Pires, Guilherme M. Lavezzo, Adriana S. A. Pereira, Murilo S. Amaral and Sergio Verjovski-Almeida, Database, Volume 2018: bay068, https://doi.org/10.1093/database/bay068.


Based on data from Vasconcelos, EJR et al., The Schistosoma mansoni genome encodes thousands of long noncoding RNAs predicted to be functional at different parasite life-cycle stages. Scientific Reports 7: 10508, 2017.


Smp_200880.1 Data


Fig. 6A for with r ≥ 0.8 or r ≤ -0.8.

Expression Fold Change Data [log2(FC)] - Download data


Gene ID Cerc 3S 24S Male Female
SmLINC00372-IBu 0 1.42 3.02 -1.83 -2.95
SmLINC01316-IBu 0 -0.35 0.57 -11.60 -4.95
SmLINC04430-IBu 0 1.35 4.06 1.40 0.01
SmLINC05559-IBu 0 -0.72 2.59 -1.58 -1.98
SmLINC06700-IBu 0 2.95 4.73 1.69 -0.46
SmLINC06836-IBu 0 5.91 8.23 0.00 0.00
Smp_200880.1 0 1.47 2.90 -4.50 -6.34

Pearson Correlation Coefficient Data - Download data


Compared Gene Gene Pearson Correlation Value p-value B.-H. adjusted p-value
Smp_200880.1 SmLINC00372-IBu 0.88 1.42e-05 3.00e-04
Smp_200880.1 SmLINC01316-IBu 0.80 3.00e-04 3.10e-03
Smp_200880.1 SmLINC04430-IBu 0.94 1.72e-07 1.49e-05
Smp_200880.1 SmLINC05559-IBu 0.86 3.81e-05 7.00e-04
Smp_200880.1 SmLINC06700-IBu 0.87 1.78e-05 4.00e-04
Smp_200880.1 SmLINC06836-IBu 0.85 4.78e-05 8.00e-04
Fig. S5 for with r ≥ 0.9 or r ≤ -0.9.

Expression Fold Change Data [log2(FC)] - Download data


Gene ID Cerc 3S 24S Male Female
Smp_010140.2 0 7.72 10.83 -3.68 -3.68
Smp_098890.1 0 -0.06 -0.10 -10.16 -9.46
Smp_138080.1 0 4.97 10.75 -3.79 3.75
Smp_200120.1 0 0.50 0.80 -8.32 -11.63
Smp_200880.1 0 1.47 2.90 -4.50 -6.34

Pearson Correlation Coefficient Data - Download data


Compared Gene Gene Pearson Correlation Value p-value B.-H. adjusted p-value
Smp_010140.2 Smp_200880.1 0.92 7.83e-07 4.49e-05
Smp_098890.1 Smp_200880.1 0.91 1.75e-06 7.93e-05
Smp_138080.1 Smp_200880.1 0.93 3.21e-07 2.42e-05
Smp_200120.1 Smp_200880.1 0.91 2.44e-06 1.00e-04