Schistosoma mansoni lncRNAs Database


This site contains the web resource described in the paper "Atlas of Schistosoma mansoni long non-coding RNAs and their expression correlation to protein-coding genes" (2018) by Elton J. R. Vasconcelos, Vinícius C. Mesel, Lucas F. daSilva, David S. Pires, Guilherme M. Lavezzo, Adriana S. A. Pereira, Murilo S. Amaral and Sergio Verjovski-Almeida, Database, Volume 2018: bay068, https://doi.org/10.1093/database/bay068.

Based on data from Vasconcelos, EJR et al., The Schistosoma mansoni genome encodes thousands of long noncoding RNAs predicted to be functional at different parasite life-cycle stages. Scientific Reports 7: 10508, 2017.

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Smp_200830.1 Data

Correlation between Smp_200830.1 Protein Coding Gene and neighbor SmLINC (neighbor to up to two Smps upstream or two Smps downstream of the SmLINC in the genome) or SmLINCs with putative trans-acting mechanisms, with correlation coefficient r ≥ 0.5 or r ≤ -0.5 [ Click Here for Details ]

Fig. 7A S3 for with r ≥ 0.5 or r ≤ -0.5.

Expression Fold Change Data [log2(FC)] - Download data

Pearson Correlation Coefficient Data - Download data

Correlation between Smp_200830.1 and robust SmLINCs (presenting four functional traits) across life cycle stages, with correlation coefficient r ≥ 0.8 or r ≤ -0.8 [ Click Here for Details ]

Fig. 6A for with r ≥ 0.8 or r ≤ -0.8.

Expression Fold Change Data [log2(FC)] - Download data

Gene ID Cerc 3S 24S Male Female
SmLINC00372-IBu 0 1.42 3.02 -1.83 -2.95
SmLINC02026-IBu 0 -0.31 0.73 -7.72 -1.09
SmLINC04430-IBu 0 1.35 4.06 1.40 0.01
SmLINC05559-IBu 0 -0.72 2.59 -1.58 -1.98
SmLINC06700-IBu 0 2.95 4.73 1.69 -0.46
SmLINC06836-IBu 0 5.91 8.23 0.00 0.00
Smp_200830.1 0 0.51 2.30 -3.02 -5.44

Pearson Correlation Coefficient Data - Download data

Compared Gene Gene Pearson Correlation Value p-value B.-H. adjusted p-value
Smp_200830.1 SmLINC00372-IBu 0.89 4.97e-06 1.00e-04
Smp_200830.1 SmLINC02026-IBu 0.84 6.63e-05 1.00e-03
Smp_200830.1 SmLINC04430-IBu 0.97 1.97e-09 7.31e-07
Smp_200830.1 SmLINC05559-IBu 0.90 4.79e-06 1.00e-04
Smp_200830.1 SmLINC06700-IBu 0.88 9.51e-06 2.00e-04
Smp_200830.1 SmLINC06836-IBu 0.88 1.33e-05 3.00e-04

Correlation between Smp_200830.1 and highly differentially expressed Smps (log2 FC ≥ 10 in at least one developmental stage) and/or SmLINCs, with correlation coefficient r ≥ 0.9 or r ≤ -0.9 [ Click Here for Details ]

Fig. S5 for with r ≥ 0.9 or r ≤ -0.9.

Expression Fold Change Data [log2(FC)] - Download data

Gene ID Cerc 3S 24S Male Female
Smp_010140.2 0 7.72 10.83 -3.68 -3.68
Smp_042090.3 0 0.00 11.29 0.00 0.00
Smp_098890.1 0 -0.06 -0.10 -10.16 -9.46
Smp_138080.1 0 4.97 10.75 -3.79 3.75
Smp_194060.1 0 0.19 1.68 -10.58 -10.66
Smp_200120.1 0 0.50 0.80 -8.32 -11.63
Smp_200830.1 0 0.51 2.30 -3.02 -5.44

Pearson Correlation Coefficient Data - Download data

Compared Gene Gene Pearson Correlation Value p-value B.-H. adjusted p-value
Smp_200830.1 Smp_010140.2 0.96 9.14e-09 2.15e-06
Smp_042090.3 Smp_200830.1 0.93 4.86e-07 3.22e-05
Smp_098890.1 Smp_200830.1 0.94 1.11e-07 1.16e-05
Smp_200830.1 Smp_138080.1 0.96 1.43e-08 2.90e-06
Smp_200830.1 Smp_194060.1 0.93 4.43e-07 3.02e-05
Smp_200830.1 Smp_200120.1 0.92 1.06e-06 5.58e-05