Schistosoma mansoni lncRNAs Database



This site contains the web resource described in the paper "Atlas of Schistosoma mansoni long non-coding RNAs and their expression correlation to protein-coding genes" (2018) by Elton J. R. Vasconcelos, Vinícius C. Mesel, Lucas F. daSilva, David S. Pires, Guilherme M. Lavezzo, Adriana S. A. Pereira, Murilo S. Amaral and Sergio Verjovski-Almeida, Database, Volume 2018: bay068, https://doi.org/10.1093/database/bay068.


Based on data from Vasconcelos, EJR et al., The Schistosoma mansoni genome encodes thousands of long noncoding RNAs predicted to be functional at different parasite life-cycle stages. Scientific Reports 7: 10508, 2017.


Smp_200810.1 Data


Fig. 6A for with r ≥ 0.8 or r ≤ -0.8.

Expression Fold Change Data [log2(FC)] - Download data


Gene ID Cerc 3S 24S Male Female
SmLINC00372-IBu 0 1.42 3.02 -1.83 -2.95
SmLINC01316-IBu 0 -0.35 0.57 -11.60 -4.95
SmLINC02646-IBu 0 0.70 0.79 -6.84 -2.55
SmLINC04430-IBu 0 1.35 4.06 1.40 0.01
SmLINC05559-IBu 0 -0.72 2.59 -1.58 -1.98
SmLINC06700-IBu 0 2.95 4.73 1.69 -0.46
SmLINC06836-IBu 0 5.91 8.23 0.00 0.00
Smp_200810.1 0 1.79 3.97 -0.86 -1.95

Pearson Correlation Coefficient Data - Download data


Compared Gene Gene Pearson Correlation Value p-value B.-H. adjusted p-value
Smp_200810.1 SmLINC00372-IBu 0.89 5.98e-06 1.00e-04
Smp_200810.1 SmLINC01316-IBu 0.83 1.00e-04 1.50e-03
Smp_200810.1 SmLINC02646-IBu 0.81 2.00e-04 2.30e-03
Smp_200810.1 SmLINC04430-IBu 0.92 7.99e-07 4.37e-05
Smp_200810.1 SmLINC05559-IBu 0.86 3.57e-05 6.00e-04
Smp_200810.1 SmLINC06700-IBu 0.94 1.11e-07 1.10e-05
Smp_200810.1 SmLINC06836-IBu 0.88 1.23e-05 3.00e-04
Fig. S5 for with r ≥ 0.9 or r ≤ -0.9.

Expression Fold Change Data [log2(FC)] - Download data


Gene ID Cerc 3S 24S Male Female
Smp_021340.3 0 9.76 11.05 9.34 9.26
Smp_032120.1 0 0.03 1.02 -10.65 -10.65
Smp_040970.3 0 11.70 13.01 5.20 8.78
Smp_098370.1 0 9.63 11.25 6.43 9.48
Smp_099160.4 0 11.96 13.30 11.03 12.32
Smp_200120.1 0 0.50 0.80 -8.32 -11.63
Smp_200810.1 0 1.79 3.97 -0.86 -1.95

Pearson Correlation Coefficient Data - Download data


Compared Gene Gene Pearson Correlation Value p-value B.-H. adjusted p-value
Smp_021340.3 Smp_200810.1 0.90 4.03e-06 1.00e-04
Smp_200810.1 Smp_032120.1 0.91 2.51e-06 1.00e-04
Smp_040970.3 Smp_200810.1 0.95 3.96e-08 5.77e-06
Smp_098370.1 Smp_200810.1 0.93 3.21e-07 2.42e-05
Smp_099160.4 Smp_200810.1 0.92 7.21e-07 4.24e-05
Smp_200120.1 Smp_200810.1 0.91 1.70e-06 7.77e-05