Schistosoma mansoni lncRNAs Database


This site contains the web resource described in the paper "Atlas of Schistosoma mansoni long non-coding RNAs and their expression correlation to protein-coding genes" (2018) by Elton J. R. Vasconcelos, Vinícius C. Mesel, Lucas F. daSilva, David S. Pires, Guilherme M. Lavezzo, Adriana S. A. Pereira, Murilo S. Amaral and Sergio Verjovski-Almeida, Database, Volume 2018: bay068, https://doi.org/10.1093/database/bay068.

Based on data from Vasconcelos, EJR et al., The Schistosoma mansoni genome encodes thousands of long noncoding RNAs predicted to be functional at different parasite life-cycle stages. Scientific Reports 7: 10508, 2017.

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Smp_200710.1 Data

Correlation between Smp_200710.1 Protein Coding Gene and neighbor SmLINC (neighbor to up to two Smps upstream or two Smps downstream of the SmLINC in the genome) or SmLINCs with putative trans-acting mechanisms, with correlation coefficient r ≥ 0.5 or r ≤ -0.5 [ Click Here for Details ]

Fig. 7A S3 for with r ≥ 0.5 or r ≤ -0.5.

Expression Fold Change Data [log2(FC)] - Download data

Pearson Correlation Coefficient Data - Download data

Correlation between Smp_200710.1 and robust SmLINCs (presenting four functional traits) across life cycle stages, with correlation coefficient r ≥ 0.8 or r ≤ -0.8 [ Click Here for Details ]

Fig. 6A for with r ≥ 0.8 or r ≤ -0.8.

Expression Fold Change Data [log2(FC)] - Download data

Gene ID Cerc 3S 24S Male Female
SmLINC00282-IBu 0 0.07 -1.80 -4.82 -4.14
SmLINC02255-IBu 0 -0.86 -1.80 -3.72 -4.71
SmLINC02630-IBu 0 -0.86 -1.66 -4.03 -11.09
SmLINC03848-IBu 0 -0.05 -2.68 -3.98 -4.70
SmLINC05284-IBu 0 -0.31 -1.54 -3.79 -5.97
SmLINC05989-IBu 0 -1.59 -3.64 -6.05 -6.59
SmLINC06535-IBu 0 -0.47 -1.74 -4.21 -5.43
SmLINC06903-IBu 0 -1.36 -4.25 -5.91 -3.41
Smp_200710.1 0 0.16 -1.95 -5.45 -5.45

Pearson Correlation Coefficient Data - Download data

Compared Gene Gene Pearson Correlation Value p-value B.-H. adjusted p-value
Smp_200710.1 SmLINC00282-IBu 0.82 1.00e-04 1.80e-03
Smp_200710.1 SmLINC02255-IBu 0.82 1.00e-04 1.70e-03
Smp_200710.1 SmLINC02630-IBu 0.82 1.00e-04 2.10e-03
Smp_200710.1 SmLINC03848-IBu 0.82 1.00e-04 2.10e-03
Smp_200710.1 SmLINC05284-IBu 0.86 3.14e-05 6.00e-04
Smp_200710.1 SmLINC05989-IBu 0.88 1.32e-05 3.00e-04
Smp_200710.1 SmLINC06535-IBu 0.87 1.67e-05 3.00e-04
Smp_200710.1 SmLINC06903-IBu 0.81 2.00e-04 2.70e-03

Correlation between Smp_200710.1 and highly differentially expressed Smps (log2 FC ≥ 10 in at least one developmental stage) and/or SmLINCs, with correlation coefficient r ≥ 0.9 or r ≤ -0.9 [ Click Here for Details ]

Fig. S5 for with r ≥ 0.9 or r ≤ -0.9.

Expression Fold Change Data [log2(FC)] - Download data

Gene ID Cerc 3S 24S Male Female
Smp_051230.4 0 -1.10 -5.26 -12.47 -12.47
Smp_200710.1 0 0.16 -1.95 -5.45 -5.45

Pearson Correlation Coefficient Data - Download data

Compared Gene Gene Pearson Correlation Value p-value B.-H. adjusted p-value
Smp_200710.1 Smp_051230.4 0.91 2.43e-06 9.99e-05