Schistosoma mansoni lncRNAs Database



This site contains the web resource described in the paper "Atlas of Schistosoma mansoni long non-coding RNAs and their expression correlation to protein-coding genes" (2018) by Elton J. R. Vasconcelos, Vinícius C. Mesel, Lucas F. daSilva, David S. Pires, Guilherme M. Lavezzo, Adriana S. A. Pereira, Murilo S. Amaral and Sergio Verjovski-Almeida, Database, Volume 2018: bay068, https://doi.org/10.1093/database/bay068.


Based on data from Vasconcelos, EJR et al., The Schistosoma mansoni genome encodes thousands of long noncoding RNAs predicted to be functional at different parasite life-cycle stages. Scientific Reports 7: 10508, 2017.


Smp_200650.1 Data


Fig. 6A for with r ≥ 0.8 or r ≤ -0.8.

Expression Fold Change Data [log2(FC)] - Download data


Gene ID Cerc 3S 24S Male Female
SmLINC00266-IBu 0 2.25 3.99 6.14 6.95
SmLINC00548-IBu 0 1.58 1.11 7.48 7.20
SmLINC01084-IBu 0 -4.17 -2.32 2.88 3.57
SmLINC01231-IBu 0 0.31 -3.75 7.29 6.55
SmLINC01431-IBu 0 4.28 4.33 10.35 10.82
SmLINC02084-IBu 0 2.05 2.87 9.42 9.88
SmLINC02546-IBu 0 1.90 1.01 8.94 9.30
SmLINC03927-IBu 0 0.00 3.30 7.68 8.27
SmLINC04684-IBu 0 0.48 -0.86 3.35 3.38
SmLINC05258-IBu 0 0.71 -0.55 3.56 3.34
Smp_200650.1 0 2.69 4.00 5.86 6.42

Pearson Correlation Coefficient Data - Download data


Compared Gene Gene Pearson Correlation Value p-value B.-H. adjusted p-value
Smp_200650.1 SmLINC00266-IBu 0.84 7.12e-05 1.10e-03
Smp_200650.1 SmLINC00548-IBu 0.81 2.00e-04 2.40e-03
Smp_200650.1 SmLINC01084-IBu 0.80 2.00e-04 2.70e-03
Smp_200650.1 SmLINC01231-IBu 0.80 2.00e-04 2.90e-03
Smp_200650.1 SmLINC01431-IBu 0.82 1.00e-04 2.00e-03
Smp_200650.1 SmLINC02084-IBu 0.85 4.54e-05 7.00e-04
Smp_200650.1 SmLINC02546-IBu 0.85 4.48e-05 7.00e-04
Smp_200650.1 SmLINC03927-IBu 0.87 1.95e-05 4.00e-04
Smp_200650.1 SmLINC04684-IBu 0.80 3.00e-04 3.30e-03
Smp_200650.1 SmLINC05258-IBu 0.80 2.00e-04 3.00e-03
Fig. S5 for with r ≥ 0.9 or r ≤ -0.9.

Expression Fold Change Data [log2(FC)] - Download data


Gene ID Cerc 3S 24S Male Female
Smp_031770.10 0 0.00 0.0 10.09 10.31
Smp_200650.1 0 2.69 4.0 5.86 6.42

Pearson Correlation Coefficient Data - Download data


Compared Gene Gene Pearson Correlation Value p-value B.-H. adjusted p-value
Smp_200650.1 Smp_031770.10 0.91 2.40e-06 9.90e-05