Schistosoma mansoni lncRNAs Database



This site contains the web resource described in the paper "Atlas of Schistosoma mansoni long non-coding RNAs and their expression correlation to protein-coding genes" (2018) by Elton J. R. Vasconcelos, Vinícius C. Mesel, Lucas F. daSilva, David S. Pires, Guilherme M. Lavezzo, Adriana S. A. Pereira, Murilo S. Amaral and Sergio Verjovski-Almeida, Database, Volume 2018: bay068, https://doi.org/10.1093/database/bay068.


Based on data from Vasconcelos, EJR et al., The Schistosoma mansoni genome encodes thousands of long noncoding RNAs predicted to be functional at different parasite life-cycle stages. Scientific Reports 7: 10508, 2017.


Smp_200510.1 Data


Fig. 6A for with r ≥ 0.8 or r ≤ -0.8.

Expression Fold Change Data [log2(FC)] - Download data


Gene ID Cerc 3S 24S Male Female
SmLINC00784-IBu 0 0.40 -3.11 -2.84 -3.25
SmLINC04366-IBu 0 0.53 -1.17 -2.70 -4.36
SmLINC05720-IBu 0 0.01 -1.80 -4.98 -8.04
Smp_200510.1 0 -0.08 -3.12 -8.78 -8.58

Pearson Correlation Coefficient Data - Download data


Compared Gene Gene Pearson Correlation Value p-value B.-H. adjusted p-value
Smp_200510.1 SmLINC00784-IBu 0.90 4.20e-06 1.00e-04
Smp_200510.1 SmLINC04366-IBu 0.82 1.00e-04 2.00e-03
Smp_200510.1 SmLINC05720-IBu 0.87 1.64e-05 3.00e-04
Fig. S5 for with r ≥ 0.9 or r ≤ -0.9.

Expression Fold Change Data [log2(FC)] - Download data


Gene ID Cerc 3S 24S Male Female
Smp_184760.1 0 -0.25 -4.83 -11.75 -14.03
Smp_200510.1 0 -0.08 -3.12 -8.78 -8.58
Smp_203100.1 0 0.53 -3.27 -9.59 -11.66
Smp_203380.1 0 0.51 -4.20 -12.37 -9.65

Pearson Correlation Coefficient Data - Download data


Compared Gene Gene Pearson Correlation Value p-value B.-H. adjusted p-value
Smp_184760.1 Smp_200510.1 0.93 1.97e-07 1.72e-05
Smp_203100.1 Smp_200510.1 0.97 5.00e-10 3.26e-07
Smp_200510.1 Smp_203380.1 0.97 3.82e-10 2.75e-07