Schistosoma mansoni lncRNAs Database



This site contains the web resource described in the paper "Atlas of Schistosoma mansoni long non-coding RNAs and their expression correlation to protein-coding genes" (2018) by Elton J. R. Vasconcelos, Vinícius C. Mesel, Lucas F. daSilva, David S. Pires, Guilherme M. Lavezzo, Adriana S. A. Pereira, Murilo S. Amaral and Sergio Verjovski-Almeida, Database, Volume 2018: bay068, https://doi.org/10.1093/database/bay068.


Based on data from Vasconcelos, EJR et al., The Schistosoma mansoni genome encodes thousands of long noncoding RNAs predicted to be functional at different parasite life-cycle stages. Scientific Reports 7: 10508, 2017.


Smp_200480.1 Data


Fig. 6A for with r ≥ 0.8 or r ≤ -0.8.

Expression Fold Change Data [log2(FC)] - Download data


Gene ID Cerc 3S 24S Male Female
SmLINC00026-IBu 0 1.41 -0.25 -3.45 -4.99
SmLINC00037-IBu 0 0.38 -1.52 -5.66 -6.88
SmLINC00893-IBu 0 1.08 -1.15 -3.04 -4.37
SmLINC01462-IBu 0 0.69 -0.90 -3.10 -4.62
SmLINC01637-IBu 0 0.25 -0.93 -6.06 -3.40
SmLINC03056-IBu 0 1.41 -1.34 -4.42 -9.40
SmLINC03443-IBu 0 2.85 1.67 -0.40 -9.21
SmLINC04106-IBu 0 1.60 -0.86 -5.26 -10.78
SmLINC04129-IBu 0 2.02 -0.05 -5.02 -3.35
SmLINC04271-IBu 0 0.79 -0.67 -2.59 -4.22
SmLINC04366-IBu 0 0.53 -1.17 -2.70 -4.36
SmLINC05178-IBu 0 3.85 -0.08 -1.72 -5.31
SmLINC05716-IBu 0 0.29 -1.48 -4.28 -5.77
SmLINC05720-IBu 0 0.01 -1.80 -4.98 -8.04
SmLINC05840-IBu 0 1.40 -1.20 -2.41 -3.85
SmLINC05887-IBu 0 1.98 -0.51 -2.69 -3.80
SmLINC05888-IBu 0 4.50 1.82 -0.36 -2.39
SmLINC06138-IBu 0 2.13 -1.25 -2.27 -2.28
SmLINC06210-IBu 0 3.36 -0.61 -1.90 -1.98
SmLINC06436-IBu 0 7.76 4.53 3.89 -2.06
SmLINC06669-IBu 0 8.70 4.94 4.70 6.60
Smp_200480.1 0 1.75 -1.49 -6.94 -6.94

Pearson Correlation Coefficient Data - Download data


Compared Gene Gene Pearson Correlation Value p-value B.-H. adjusted p-value
Smp_200480.1 SmLINC00026-IBu 0.92 1.09e-06 5.45e-05
Smp_200480.1 SmLINC00037-IBu 0.81 2.00e-04 2.70e-03
Smp_200480.1 SmLINC00893-IBu 0.83 9.34e-05 1.30e-03
Smp_200480.1 SmLINC01462-IBu 0.86 2.75e-05 5.00e-04
Smp_200480.1 SmLINC01637-IBu 0.82 1.00e-04 1.90e-03
Smp_200480.1 SmLINC03056-IBu 0.85 4.76e-05 8.00e-04
Smp_200480.1 SmLINC03443-IBu 0.80 3.00e-04 3.40e-03
Smp_200480.1 SmLINC04106-IBu 0.94 8.01e-08 8.81e-06
Smp_200480.1 SmLINC04129-IBu 0.84 7.35e-05 1.10e-03
Smp_200480.1 SmLINC04271-IBu 0.91 2.25e-06 9.14e-05
Smp_200480.1 SmLINC04366-IBu 0.80 2.00e-04 2.80e-03
Smp_200480.1 SmLINC05178-IBu 0.87 1.59e-05 3.00e-04
Smp_200480.1 SmLINC05716-IBu 0.83 9.75e-05 1.30e-03
Smp_200480.1 SmLINC05720-IBu 0.86 3.34e-05 6.00e-04
Smp_200480.1 SmLINC05840-IBu 0.89 7.41e-06 2.00e-04
Smp_200480.1 SmLINC05887-IBu 0.89 5.95e-06 1.00e-04
Smp_200480.1 SmLINC05888-IBu 0.80 3.00e-04 3.40e-03
Smp_200480.1 SmLINC06138-IBu 0.89 6.30e-06 1.00e-04
Smp_200480.1 SmLINC06210-IBu 0.80 2.00e-04 3.00e-03
Smp_200480.1 SmLINC06436-IBu 0.80 3.00e-04 3.30e-03
Smp_200480.1 SmLINC06669-IBu 0.81 2.00e-04 2.70e-03
Fig. S5 for with r ≥ 0.9 or r ≤ -0.9.

Expression Fold Change Data [log2(FC)] - Download data


Gene ID Cerc 3S 24S Male Female
Smp_193700.1 0 2.00 0.59 -11.32 -11.32
Smp_200480.1 0 1.75 -1.49 -6.94 -6.94

Pearson Correlation Coefficient Data - Download data


Compared Gene Gene Pearson Correlation Value p-value B.-H. adjusted p-value
Smp_200480.1 Smp_193700.1 0.92 1.09e-06 5.68e-05