Schistosoma mansoni lncRNAs Database



This site contains the web resource described in the paper "Atlas of Schistosoma mansoni long non-coding RNAs and their expression correlation to protein-coding genes" (2018) by Elton J. R. Vasconcelos, Vinícius C. Mesel, Lucas F. daSilva, David S. Pires, Guilherme M. Lavezzo, Adriana S. A. Pereira, Murilo S. Amaral and Sergio Verjovski-Almeida, Database, Volume 2018: bay068, https://doi.org/10.1093/database/bay068.


Based on data from Vasconcelos, EJR et al., The Schistosoma mansoni genome encodes thousands of long noncoding RNAs predicted to be functional at different parasite life-cycle stages. Scientific Reports 7: 10508, 2017.


Smp_200440.1 Data


Fig. 6A for with r ≥ 0.8 or r ≤ -0.8.

Expression Fold Change Data [log2(FC)] - Download data


Gene ID Cerc 3S 24S Male Female
SmLINC00376-IBu 0 1.87 -0.39 3.34 3.93
SmLINC02255-IBu 0 -0.86 -1.80 -3.72 -4.71
SmLINC02630-IBu 0 -0.86 -1.66 -4.03 -11.09
SmLINC02657-IBu 0 -0.90 -1.95 -11.76 -11.76
SmLINC03236-IBu 0 5.69 1.95 7.32 7.27
SmLINC03769-IBu 0 -1.05 -2.94 -6.89 -9.10
SmLINC03930-IBu 0 -0.18 -2.11 -8.92 -4.64
SmLINC05685-IBu 0 5.64 5.26 5.37 7.19
SmLINC05990-IBu 0 9.67 10.42 11.79 11.49
SmLINC06535-IBu 0 -0.47 -1.74 -4.21 -5.43
Smp_200440.1 0 1.00 0.69 3.32 4.08

Pearson Correlation Coefficient Data - Download data


Compared Gene Gene Pearson Correlation Value p-value B.-H. adjusted p-value
Smp_200440.1 SmLINC00376-IBu 0.87 1.71e-05 3.00e-04
Smp_200440.1 SmLINC02255-IBu -0.85 5.57e-05 9.00e-04
Smp_200440.1 SmLINC02630-IBu -0.84 6.27e-05 1.00e-03
Smp_200440.1 SmLINC02657-IBu -0.81 1.00e-04 2.30e-03
Smp_200440.1 SmLINC03236-IBu 0.85 5.51e-05 9.00e-04
Smp_200440.1 SmLINC03769-IBu -0.80 3.00e-04 3.40e-03
Smp_200440.1 SmLINC03930-IBu -0.81 2.00e-04 2.60e-03
Smp_200440.1 SmLINC05685-IBu 0.82 1.00e-04 1.80e-03
Smp_200440.1 SmLINC05990-IBu 0.83 1.00e-04 1.50e-03
Smp_200440.1 SmLINC06535-IBu -0.80 3.00e-04 3.20e-03