Schistosoma mansoni lncRNAs Database



This site contains the web resource described in the paper "Atlas of Schistosoma mansoni long non-coding RNAs and their expression correlation to protein-coding genes" (2018) by Elton J. R. Vasconcelos, Vinícius C. Mesel, Lucas F. daSilva, David S. Pires, Guilherme M. Lavezzo, Adriana S. A. Pereira, Murilo S. Amaral and Sergio Verjovski-Almeida, Database, Volume 2018: bay068, https://doi.org/10.1093/database/bay068.


Based on data from Vasconcelos, EJR et al., The Schistosoma mansoni genome encodes thousands of long noncoding RNAs predicted to be functional at different parasite life-cycle stages. Scientific Reports 7: 10508, 2017.


Smp_200390.1 Data


Fig. 6A for with r ≥ 0.8 or r ≤ -0.8.

Expression Fold Change Data [log2(FC)] - Download data


Gene ID Cerc 3S 24S Male Female
SmLINC00282-IBu 0 0.07 -1.80 -4.82 -4.14
SmLINC01486-IBu 0 0.59 -1.26 -4.75 -5.22
SmLINC02630-IBu 0 -0.86 -1.66 -4.03 -11.09
SmLINC05720-IBu 0 0.01 -1.80 -4.98 -8.04
SmLINC06535-IBu 0 -0.47 -1.74 -4.21 -5.43
Smp_200390.1 0 0.15 -1.24 -5.66 -5.58

Pearson Correlation Coefficient Data - Download data


Compared Gene Gene Pearson Correlation Value p-value B.-H. adjusted p-value
Smp_200390.1 SmLINC00282-IBu 0.80 3.00e-04 3.20e-03
Smp_200390.1 SmLINC01486-IBu 0.81 2.00e-04 2.40e-03
Smp_200390.1 SmLINC02630-IBu 0.80 2.00e-04 3.00e-03
Smp_200390.1 SmLINC05720-IBu 0.83 1.00e-04 1.40e-03
Smp_200390.1 SmLINC06535-IBu 0.91 1.38e-06 6.46e-05
Fig. S5 for with r ≥ 0.9 or r ≤ -0.9.

Expression Fold Change Data [log2(FC)] - Download data


Gene ID Cerc 3S 24S Male Female
Smp_067980.1 0 -0.94 -11.67 -4.00 -4.18
Smp_165180.1 0 -1.47 -9.43 -12.79 -7.00
Smp_200390.1 0 0.15 -1.24 -5.66 -5.58

Pearson Correlation Coefficient Data - Download data


Compared Gene Gene Pearson Correlation Value p-value B.-H. adjusted p-value
Smp_200390.1 Smp_067980.1 0.90 4.43e-06 1.00e-04
Smp_200390.1 Smp_165180.1 0.91 1.80e-06 8.09e-05