Schistosoma mansoni lncRNAs Database



This site contains the web resource described in the paper "Atlas of Schistosoma mansoni long non-coding RNAs and their expression correlation to protein-coding genes" (2018) by Elton J. R. Vasconcelos, Vinícius C. Mesel, Lucas F. daSilva, David S. Pires, Guilherme M. Lavezzo, Adriana S. A. Pereira, Murilo S. Amaral and Sergio Verjovski-Almeida, Database, Volume 2018: bay068, https://doi.org/10.1093/database/bay068.


Based on data from Vasconcelos, EJR et al., The Schistosoma mansoni genome encodes thousands of long noncoding RNAs predicted to be functional at different parasite life-cycle stages. Scientific Reports 7: 10508, 2017.


Smp_200320.1 Data


Fig. 6A for with r ≥ 0.8 or r ≤ -0.8.

Expression Fold Change Data [log2(FC)] - Download data


Gene ID Cerc 3S 24S Male Female
SmLINC03769-IBu 0 -1.05 -2.94 -6.89 -9.10
SmLINC04957-IBu 0 -2.62 -5.90 -3.92 -7.44
SmLINC06890-IBu 0 -2.18 -6.70 -7.95 -9.08
SmLINC06903-IBu 0 -1.36 -4.25 -5.91 -3.41
Smp_200320.1 0 -2.27 -7.31 -5.59 -8.81

Pearson Correlation Coefficient Data - Download data


Compared Gene Gene Pearson Correlation Value p-value B.-H. adjusted p-value
Smp_200320.1 SmLINC03769-IBu 0.80 2.00e-04 2.90e-03
Smp_200320.1 SmLINC04957-IBu 0.88 1.37e-05 3.00e-04
Smp_200320.1 SmLINC06890-IBu 0.96 4.20e-09 1.20e-06
Smp_200320.1 SmLINC06903-IBu 0.89 4.88e-06 1.00e-04
Fig. S5 for with r ≥ 0.9 or r ≤ -0.9.

Expression Fold Change Data [log2(FC)] - Download data


Gene ID Cerc 3S 24S Male Female
Smp_031000.1 0 -0.87 -10.51 -4.40 -10.51
Smp_043670.2 0 -2.66 -2.86 -6.28 -13.62
Smp_096020.1 0 -1.77 -8.42 -9.21 -10.05
Smp_182890.1 0 -1.33 -1.67 -9.07 -10.72
Smp_186130.1 0 -2.11 -1.47 -10.40 -10.85
Smp_200320.1 0 -2.27 -7.31 -5.59 -8.81
Smp_205860.1 0 -1.49 -2.52 -10.82 -15.29
Smp_206200.1 0 -1.74 -3.03 -14.12 -16.70

Pearson Correlation Coefficient Data - Download data


Compared Gene Gene Pearson Correlation Value p-value B.-H. adjusted p-value
Smp_200320.1 Smp_031000.1 0.94 9.27e-08 1.02e-05
Smp_043670.2 Smp_200320.1 0.93 3.04e-07 2.32e-05
Smp_200320.1 Smp_096020.1 0.93 4.42e-07 3.01e-05
Smp_200320.1 Smp_182890.1 0.96 1.17e-08 2.54e-06
Smp_200320.1 Smp_186130.1 0.92 9.68e-07 5.21e-05
Smp_200320.1 Smp_205860.1 0.93 2.42e-07 1.98e-05
Smp_206200.1 Smp_200320.1 0.92 6.48e-07 3.94e-05