Schistosoma mansoni lncRNAs Database



This site contains the web resource described in the paper "Atlas of Schistosoma mansoni long non-coding RNAs and their expression correlation to protein-coding genes" (2018) by Elton J. R. Vasconcelos, Vinícius C. Mesel, Lucas F. daSilva, David S. Pires, Guilherme M. Lavezzo, Adriana S. A. Pereira, Murilo S. Amaral and Sergio Verjovski-Almeida, Database, Volume 2018: bay068, https://doi.org/10.1093/database/bay068.


Based on data from Vasconcelos, EJR et al., The Schistosoma mansoni genome encodes thousands of long noncoding RNAs predicted to be functional at different parasite life-cycle stages. Scientific Reports 7: 10508, 2017.


Smp_200120.1 Data


Fig. 6A for with r ≥ 0.8 or r ≤ -0.8.

Expression Fold Change Data [log2(FC)] - Download data


Gene ID Cerc 3S 24S Male Female
SmLINC00372-IBu 0 1.42 3.02 -1.83 -2.95
SmLINC01316-IBu 0 -0.35 0.57 -11.60 -4.95
SmLINC02646-IBu 0 0.70 0.79 -6.84 -2.55
SmLINC04430-IBu 0 1.35 4.06 1.40 0.01
SmLINC05559-IBu 0 -0.72 2.59 -1.58 -1.98
SmLINC06490-IBu 0 -0.11 0.31 -3.82 -4.89
SmLINC06646-IBu 0 1.59 1.70 -7.49 -7.49
SmLINC06700-IBu 0 2.95 4.73 1.69 -0.46
SmLINC06836-IBu 0 5.91 8.23 0.00 0.00
Smp_200120.1 0 0.50 0.80 -8.32 -11.63

Pearson Correlation Coefficient Data - Download data


Compared Gene Gene Pearson Correlation Value p-value B.-H. adjusted p-value
Smp_200120.1 SmLINC00372-IBu 0.93 4.47e-07 2.90e-05
Smp_200120.1 SmLINC01316-IBu 0.89 7.55e-06 2.00e-04
Smp_200120.1 SmLINC02646-IBu 0.88 1.48e-05 3.00e-04
Smp_200120.1 SmLINC04430-IBu 0.87 1.69e-05 3.00e-04
Smp_200120.1 SmLINC05559-IBu 0.85 5.95e-05 9.00e-04
Smp_200120.1 SmLINC06490-IBu 0.90 3.01e-06 1.00e-04
Smp_200120.1 SmLINC06646-IBu 0.83 1.00e-04 1.40e-03
Smp_200120.1 SmLINC06700-IBu 0.90 2.59e-06 1.00e-04
Smp_200120.1 SmLINC06836-IBu 0.89 7.76e-06 2.00e-04
Fig. S5 for with r ≥ 0.9 or r ≤ -0.9.

Expression Fold Change Data [log2(FC)] - Download data


Gene ID Cerc 3S 24S Male Female
SmLINC00192-IBu 0 0.61 2.35 -8.28 -4.07
SmLINC00372-IBu 0 1.42 3.02 -1.83 -2.95
SmLINC00513-IBu 0 6.74 8.35 0.00 3.11
SmLINC01002-IBu 0 3.82 5.68 -2.26 -2.26
SmLINC02970-IBu 0 2.59 3.54 0.54 -1.36
SmLINC03924-IBu 0 0.69 2.22 -1.76 -2.59
SmLINC04003-IBu 0 -0.16 1.42 -3.63 -8.87
SmLINC04007-IBu 0 -1.63 0.45 -8.95 -8.95
SmLINC06048-IBu 0 0.79 1.93 -4.19 -7.12
SmLINC06183-IBu 0 1.58 3.42 -7.62 -7.62
SmLINC06241-IBu 0 2.77 5.19 0.64 -7.79
SmLINC06287-IBu 0 0.35 0.50 -4.73 -4.57
SmLINC06490-IBu 0 -0.11 0.31 -3.82 -4.89
SmLINC06700-IBu 0 2.95 4.73 1.69 -0.46
SmLINC06839-IBu 0 -0.39 0.65 -6.55 -6.90
SmLINC07016-IBu 0 1.89 2.73 -4.50 -5.17
Smp_014660.1 0 1.27 2.34 -5.37 -7.50
Smp_017020.1 0 0.08 0.95 -6.58 -6.58
Smp_018590.1 0 0.89 1.74 -2.48 -5.97
Smp_018800.1 0 3.14 4.22 -2.08 -1.80
Smp_022320.1 0 0.31 -0.15 -2.49 -6.20
Smp_023140.1 0 -0.84 -0.87 -5.26 -4.87
Smp_024820.1 0 4.10 4.75 1.46 1.82
Smp_027990.1 0 1.00 2.03 -4.13 -5.46
Smp_029940.1 0 0.49 2.88 -3.66 -1.65
Smp_031770.3 0 0.52 1.55 -9.48 -9.48
Smp_032120.1 0 0.03 1.02 -10.65 -10.65
Smp_033670.2 0 1.59 2.15 -4.87 -4.87
Smp_035640.1 0 0.66 2.47 -3.45 -3.92
Smp_036270.3 0 1.18 2.21 -10.17 -10.17
Smp_049600.3 0 1.80 2.94 -9.17 -1.90
Smp_052290.1 0 1.68 2.86 -1.36 -2.94
Smp_059340.3 0 0.76 1.23 -11.82 -11.82
Smp_069160.2 0 -0.02 1.03 -5.33 -4.92
Smp_076040.2 0 -0.64 1.55 -9.83 -9.83
Smp_077820.1 0 -0.65 -0.64 -4.87 -7.00
Smp_079260.1 0 1.54 2.23 -2.79 -3.15
Smp_080280.1 0 -0.42 -0.06 -4.59 -4.87
Smp_098890.1 0 -0.06 -0.10 -10.16 -9.46
Smp_099560.1 0 8.15 8.89 -2.27 -2.27
Smp_106750.1 0 0.07 1.73 -5.83 -8.52
Smp_112520.1 0 1.59 3.68 -6.44 -6.44
Smp_112930.1 0 1.35 2.48 -6.71 -8.42
Smp_120740.1 0 -0.36 1.05 -4.86 -4.75
Smp_123870.1 0 -0.64 -0.72 -4.74 -5.09
Smp_136120.1 0 5.65 6.93 4.13 3.70
Smp_138140.1 0 2.02 2.69 -3.31 -2.76
Smp_139170.1 0 2.45 4.33 0.78 0.06
Smp_139940.1 0 3.07 4.50 -0.39 -2.02
Smp_143180.1 0 1.31 2.18 -4.27 -1.25
Smp_144120.1 0 1.28 2.86 -1.28 -2.28
Smp_148110.1 0 1.60 3.38 -2.98 -3.24
Smp_149220.1 0 0.14 0.72 -3.31 -3.61
Smp_149870.1 0 0.08 0.15 -3.14 -8.77
Smp_151220.1 0 1.28 1.74 -3.16 -3.91
Smp_152900.1 0 -0.24 0.96 -3.27 -3.63
Smp_153650.1 0 -0.02 1.72 -2.93 -3.55
Smp_155690.1 0 0.49 1.13 -3.13 -4.07
Smp_157270.1 0 3.45 4.02 -0.36 -1.80
Smp_157280.1 0 4.32 5.40 2.85 1.60
Smp_158680.1 0 0.18 0.75 -3.19 -3.53
Smp_159070.3 0 -0.25 1.24 -10.95 -4.48
Smp_159380.1 0 0.56 1.21 -4.02 -3.82
Smp_160670.1 0 1.07 2.08 -4.35 -3.20
Smp_161270.1 0 1.27 1.64 -8.43 -8.43
Smp_168800.1 0 0.13 -0.51 -10.46 -10.46
Smp_174750.1 0 1.35 2.65 -1.87 -1.39
Smp_180050.1 0 1.06 0.86 -2.29 -5.29
Smp_180630.1 0 0.12 1.09 -6.32 -9.26
Smp_184370.1 0 -1.11 0.66 -3.32 -4.28
Smp_189180.2 0 -0.25 -0.54 -4.07 -4.89
Smp_190370.1 0 1.12 2.62 -1.76 -2.23
Smp_190900.1 0 0.50 -0.24 -3.60 -3.79
Smp_194110.1 0 0.85 0.42 -9.97 -9.97
Smp_196410.1 0 0.98 1.80 -3.57 -2.94
Smp_197150.1 0 -0.08 0.36 -3.43 -4.33
Smp_200120.1 0 0.50 0.80 -8.32 -11.63
Smp_200810.1 0 1.79 3.97 -0.86 -1.95
Smp_200830.1 0 0.51 2.30 -3.02 -5.44
Smp_200840.1 0 0.23 -0.00 -8.20 -7.06
Smp_200880.1 0 1.47 2.90 -4.50 -6.34
Smp_205050.1 0 0.07 1.73 -5.83 -8.52
Smp_205060.1 0 0.36 1.28 -6.63 -10.51

Pearson Correlation Coefficient Data - Download data


Compared Gene Gene Pearson Correlation Value p-value B.-H. adjusted p-value
Smp_200120.1 SmLINC00192-IBu 0.95 3.42e-08 5.22e-06
Smp_200120.1 SmLINC00372-IBu 0.93 4.47e-07 3.03e-05
Smp_200120.1 SmLINC00513-IBu 0.93 3.36e-07 2.49e-05
Smp_200120.1 SmLINC01002-IBu 0.93 4.87e-07 3.22e-05
Smp_200120.1 SmLINC02970-IBu 0.90 4.85e-06 1.00e-04
Smp_200120.1 SmLINC03924-IBu 0.96 3.74e-09 1.19e-06
Smp_200120.1 SmLINC04003-IBu 0.92 6.87e-07 4.10e-05
Smp_200120.1 SmLINC04007-IBu 0.91 1.96e-06 8.58e-05
Smp_200120.1 SmLINC06048-IBu 0.96 1.23e-08 2.62e-06
Smp_200120.1 SmLINC06183-IBu 0.91 2.05e-06 8.86e-05
Smp_200120.1 SmLINC06241-IBu 0.90 2.53e-06 1.00e-04
Smp_200120.1 SmLINC06287-IBu 0.91 1.20e-06 6.09e-05
Smp_200120.1 SmLINC06490-IBu 0.90 3.01e-06 1.00e-04
Smp_200120.1 SmLINC06700-IBu 0.90 2.59e-06 1.00e-04
Smp_200120.1 SmLINC06839-IBu 0.96 4.14e-09 1.27e-06
Smp_200120.1 SmLINC07016-IBu 0.97 1.18e-09 5.67e-07
Smp_200120.1 Smp_014660.1 0.92 5.76e-07 3.63e-05
Smp_200120.1 Smp_017020.1 0.92 1.00e-06 5.34e-05
Smp_200120.1 Smp_018590.1 0.95 5.36e-08 7.08e-06
Smp_200120.1 Smp_018800.1 0.91 2.48e-06 1.00e-04
Smp_200120.1 Smp_022320.1 0.92 7.69e-07 4.44e-05
Smp_200120.1 Smp_023140.1 0.90 3.63e-06 1.00e-04
Smp_024820.1 Smp_200120.1 0.92 7.93e-07 4.53e-05
Smp_200120.1 Smp_027990.1 0.95 5.75e-08 7.43e-06
Smp_200120.1 Smp_029940.1 0.90 4.79e-06 1.00e-04
Smp_200120.1 Smp_031770.3 0.97 1.80e-09 7.44e-07
Smp_200120.1 Smp_032120.1 0.92 1.12e-06 5.80e-05
Smp_200120.1 Smp_033670.2 0.91 1.95e-06 8.56e-05
Smp_200120.1 Smp_035640.1 0.92 5.25e-07 3.40e-05
Smp_200120.1 Smp_036270.3 0.94 9.26e-08 1.02e-05
Smp_049600.3 Smp_200120.1 0.94 1.69e-07 1.55e-05
Smp_200120.1 Smp_052290.1 0.92 9.97e-07 5.32e-05
Smp_200120.1 Smp_059340.3 0.91 1.71e-06 7.81e-05
Smp_200120.1 Smp_069160.2 0.94 1.19e-07 1.22e-05
Smp_200120.1 Smp_076040.2 0.91 2.41e-06 9.93e-05
Smp_200120.1 Smp_077820.1 0.96 7.73e-09 1.92e-06
Smp_079260.1 Smp_200120.1 0.90 3.80e-06 1.00e-04
Smp_200120.1 Smp_080280.1 0.91 2.32e-06 9.68e-05
Smp_098890.1 Smp_200120.1 0.91 1.68e-06 7.71e-05
Smp_200120.1 Smp_099560.1 0.92 7.71e-07 4.44e-05
Smp_106750.1 Smp_200120.1 0.97 1.06e-09 5.30e-07
Smp_200120.1 Smp_112520.1 0.94 1.30e-07 1.29e-05
Smp_200120.1 Smp_112930.1 0.97 8.42e-10 4.56e-07
Smp_120740.1 Smp_200120.1 0.91 2.47e-06 1.00e-04
Smp_200120.1 Smp_123870.1 0.93 2.61e-07 2.09e-05
Smp_200120.1 Smp_136120.1 0.91 1.28e-06 6.36e-05
Smp_200120.1 Smp_138140.1 0.94 1.10e-07 1.16e-05
Smp_200120.1 Smp_139170.1 0.91 1.80e-06 8.08e-05
Smp_200120.1 Smp_139940.1 0.93 4.23e-07 2.92e-05
Smp_200120.1 Smp_143180.1 0.90 2.66e-06 1.00e-04
Smp_200120.1 Smp_144120.1 0.91 1.22e-06 6.14e-05
Smp_200120.1 Smp_148110.1 0.93 2.76e-07 2.17e-05
Smp_200120.1 Smp_149220.1 0.97 9.87e-10 5.05e-07
Smp_149870.1 Smp_200120.1 0.97 1.22e-09 5.80e-07
Smp_200120.1 Smp_151220.1 0.91 1.56e-06 7.32e-05
Smp_200120.1 Smp_152900.1 0.96 5.18e-09 1.47e-06
Smp_200120.1 Smp_153650.1 0.94 1.31e-07 1.30e-05
Smp_200120.1 Smp_155690.1 0.94 1.12e-07 1.17e-05
Smp_200120.1 Smp_157270.1 0.91 1.71e-06 7.81e-05
Smp_200120.1 Smp_157280.1 0.90 3.59e-06 1.00e-04
Smp_200120.1 Smp_158680.1 0.94 1.81e-07 1.63e-05
Smp_200120.1 Smp_159070.3 0.91 1.38e-06 6.70e-05
Smp_200120.1 Smp_159380.1 0.97 1.29e-09 6.01e-07
Smp_200120.1 Smp_160670.1 0.95 2.97e-08 4.74e-06
Smp_200120.1 Smp_161270.1 0.92 8.09e-07 4.60e-05
Smp_200120.1 Smp_168800.1 0.95 1.99e-08 3.63e-06
Smp_174750.1 Smp_200120.1 0.95 4.29e-08 6.09e-06
Smp_200120.1 Smp_180050.1 0.98 1.19e-10 1.30e-07
Smp_180630.1 Smp_200120.1 0.92 7.65e-07 4.42e-05
Smp_200120.1 Smp_184370.1 0.92 7.78e-07 4.47e-05
Smp_200120.1 Smp_189180.2 0.96 6.03e-09 1.63e-06
Smp_200120.1 Smp_190370.1 0.93 3.22e-07 2.42e-05
Smp_200120.1 Smp_190900.1 0.90 4.48e-06 1.00e-04
Smp_200120.1 Smp_194110.1 0.97 1.94e-10 1.78e-07
Smp_200120.1 Smp_196410.1 0.92 5.75e-07 3.62e-05
Smp_200120.1 Smp_197150.1 0.91 1.21e-06 6.12e-05
Smp_200120.1 Smp_200810.1 0.91 1.70e-06 7.77e-05
Smp_200830.1 Smp_200120.1 0.92 1.06e-06 5.58e-05
Smp_200840.1 Smp_200120.1 0.95 4.53e-08 6.32e-06
Smp_200120.1 Smp_200880.1 0.91 2.44e-06 1.00e-04
Smp_205050.1 Smp_200120.1 0.97 1.06e-09 5.30e-07
Smp_200120.1 Smp_205060.1 0.93 5.11e-07 3.33e-05