Schistosoma mansoni lncRNAs Database



This site contains the web resource described in the paper "Atlas of Schistosoma mansoni long non-coding RNAs and their expression correlation to protein-coding genes" (2018) by Elton J. R. Vasconcelos, Vinícius C. Mesel, Lucas F. daSilva, David S. Pires, Guilherme M. Lavezzo, Adriana S. A. Pereira, Murilo S. Amaral and Sergio Verjovski-Almeida, Database, Volume 2018: bay068, https://doi.org/10.1093/database/bay068.


Based on data from Vasconcelos, EJR et al., The Schistosoma mansoni genome encodes thousands of long noncoding RNAs predicted to be functional at different parasite life-cycle stages. Scientific Reports 7: 10508, 2017.


Smp_199910.1 Data


Fig. 6A for with r ≥ 0.8 or r ≤ -0.8.

Expression Fold Change Data [log2(FC)] - Download data


Gene ID Cerc 3S 24S Male Female
SmLINC00171-IBu 0 -0.59 -5.27 3.90 3.47
SmLINC00266-IBu 0 2.25 3.99 6.14 6.95
SmLINC00369-IBu 0 1.32 0.40 6.04 6.28
SmLINC00477-IBu 0 -1.14 -0.46 4.37 3.06
SmLINC00484-IBu 0 -0.02 2.64 6.82 5.24
SmLINC00548-IBu 0 1.58 1.11 7.48 7.20
SmLINC00633-IBu 0 1.89 0.00 7.59 7.46
SmLINC01066-IBu 0 0.76 1.52 6.33 5.39
SmLINC01139-IBu 0 -1.59 -5.89 3.96 3.29
SmLINC01431-IBu 0 4.28 4.33 10.35 10.82
SmLINC01433-IBu 0 5.33 4.84 12.27 11.18
SmLINC01435-IBu 0 -2.57 1.02 6.17 5.55
SmLINC01538-IBu 0 0.00 3.62 10.85 10.43
SmLINC01746-IBu 0 -3.80 -0.66 2.43 2.13
SmLINC01822-IBu 0 0.00 0.00 7.51 5.59
SmLINC02084-IBu 0 2.05 2.87 9.42 9.88
SmLINC02546-IBu 0 1.90 1.01 8.94 9.30
SmLINC03108-IBu 0 1.12 -0.64 3.64 3.93
SmLINC03309-IBu 0 -0.28 0.72 5.03 4.47
SmLINC03542-IBu 0 3.10 -2.22 9.17 7.75
SmLINC03693-IBu 0 0.04 0.11 4.65 4.21
SmLINC03927-IBu 0 0.00 3.30 7.68 8.27
SmLINC04054-IBu 0 0.17 -0.60 5.38 2.72
SmLINC04345-IBu 0 -0.21 -0.00 6.97 4.53
SmLINC04475-IBu 0 -0.34 2.17 4.09 3.42
SmLINC04521-IBu 0 0.00 2.57 11.17 11.06
SmLINC04663-IBu 0 -2.56 -3.27 2.68 1.54
SmLINC04684-IBu 0 0.48 -0.86 3.35 3.38
SmLINC04769-IBu 0 1.36 2.94 5.73 3.10
SmLINC05009-IBu 0 0.41 -0.30 3.78 1.52
SmLINC05147-IBu 0 -2.38 -0.94 2.89 2.87
SmLINC05171-IBu 0 -0.19 -0.55 5.90 3.90
SmLINC05258-IBu 0 0.71 -0.55 3.56 3.34
SmLINC06007-IBu 0 -3.84 -0.77 4.39 2.11
SmLINC06221-IBu 0 2.16 3.44 6.39 5.80
SmLINC06418-IBu 0 -2.45 2.43 6.45 5.75
SmLINC06449-IBu 0 2.33 4.31 7.30 6.63
SmLINC06536-IBu 0 -3.65 0.03 5.24 4.25
SmLINC06538-IBu 0 0.43 1.18 7.23 4.57
SmLINC06543-IBu 0 -0.52 0.39 3.89 3.37
Smp_199910.1 0 -4.69 -0.28 4.44 3.98

Pearson Correlation Coefficient Data - Download data


Compared Gene Gene Pearson Correlation Value p-value B.-H. adjusted p-value
Smp_199910.1 SmLINC00171-IBu 0.98 8.99e-11 9.94e-08
Smp_199910.1 SmLINC00266-IBu 0.83 9.11e-05 1.30e-03
Smp_199910.1 SmLINC00369-IBu 0.88 1.43e-05 3.00e-04
Smp_199910.1 SmLINC00477-IBu 0.92 5.21e-07 3.24e-05
Smp_199910.1 SmLINC00484-IBu 0.83 9.99e-05 1.40e-03
Smp_199910.1 SmLINC00548-IBu 0.86 2.70e-05 5.00e-04
Smp_199910.1 SmLINC00633-IBu 0.88 1.42e-05 3.00e-04
Smp_199910.1 SmLINC01066-IBu 0.96 3.57e-09 1.07e-06
Smp_199910.1 SmLINC01139-IBu 0.85 5.04e-05 8.00e-04
Smp_199910.1 SmLINC01431-IBu 0.84 7.08e-05 1.00e-03
Smp_199910.1 SmLINC01433-IBu 0.97 6.50e-10 3.57e-07
Smp_199910.1 SmLINC01435-IBu 0.91 1.86e-06 7.98e-05
Smp_199910.1 SmLINC01538-IBu 0.84 7.21e-05 1.10e-03
Smp_199910.1 SmLINC01746-IBu 0.88 1.33e-05 3.00e-04
Smp_199910.1 SmLINC01822-IBu 0.93 1.97e-07 1.64e-05
Smp_199910.1 SmLINC02084-IBu 0.91 1.97e-06 8.32e-05
Smp_199910.1 SmLINC02546-IBu 0.86 3.49e-05 6.00e-04
Smp_199910.1 SmLINC03108-IBu 0.95 2.76e-08 4.25e-06
Smp_199910.1 SmLINC03309-IBu 0.88 8.98e-06 2.00e-04
Smp_199910.1 SmLINC03542-IBu 0.91 1.62e-06 7.23e-05
Smp_199910.1 SmLINC03693-IBu 0.93 2.20e-07 1.77e-05
Smp_199910.1 SmLINC03927-IBu 0.81 1.00e-04 2.10e-03
Smp_199910.1 SmLINC04054-IBu 0.84 6.26e-05 1.00e-03
Smp_199910.1 SmLINC04345-IBu 0.80 2.00e-04 3.00e-03
Smp_199910.1 SmLINC04475-IBu 0.84 6.40e-05 1.00e-03
Smp_199910.1 SmLINC04521-IBu 0.81 2.00e-04 2.50e-03
Smp_199910.1 SmLINC04663-IBu 0.84 7.61e-05 1.10e-03
Smp_199910.1 SmLINC04684-IBu 0.91 1.68e-06 7.43e-05
Smp_199910.1 SmLINC04769-IBu 0.84 6.35e-05 1.00e-03
Smp_199910.1 SmLINC05009-IBu 0.87 1.58e-05 3.00e-04
Smp_199910.1 SmLINC05147-IBu 0.91 1.80e-06 7.81e-05
Smp_199910.1 SmLINC05171-IBu 0.90 3.69e-06 1.00e-04
Smp_199910.1 SmLINC05258-IBu 0.94 7.41e-08 8.35e-06
Smp_199910.1 SmLINC06007-IBu 0.93 3.14e-07 2.27e-05
Smp_199910.1 SmLINC06221-IBu 0.94 1.91e-07 1.60e-05
Smp_199910.1 SmLINC06418-IBu 0.90 4.35e-06 1.00e-04
Smp_199910.1 SmLINC06449-IBu 0.81 1.00e-04 2.30e-03
Smp_199910.1 SmLINC06536-IBu 0.92 1.00e-06 5.14e-05
Smp_199910.1 SmLINC06538-IBu 0.88 1.02e-05 2.00e-04
Smp_199910.1 SmLINC06543-IBu 0.96 1.11e-08 2.29e-06
Fig. S5 for with r ≥ 0.9 or r ≤ -0.9.

Expression Fold Change Data [log2(FC)] - Download data


Gene ID Cerc 3S 24S Male Female
Smp_045200.1 0 3.00 7.71 11.33 10.66
Smp_058660.1 0 1.16 3.97 10.53 10.53
Smp_082580.1 0 4.26 1.47 10.78 9.72
Smp_084270.1 0 3.51 4.06 10.11 8.38
Smp_123200.1 0 0.00 0.00 12.38 11.42
Smp_125210.1 0 5.44 5.31 11.82 10.51
Smp_134960.1 0 -1.83 4.14 10.34 9.04
Smp_137320.1 0 0.00 5.10 10.68 10.40
Smp_141680.1 0 1.93 6.74 10.30 9.72
Smp_145400.1 0 4.59 7.69 11.32 11.39
Smp_151120.1 0 2.34 3.50 10.04 9.86
Smp_163940.1 0 2.69 6.26 10.12 8.26
Smp_170280.1 0 2.81 5.87 10.21 9.37
Smp_194960.1 0 0.00 0.00 17.20 15.87
Smp_194970.1 0 6.28 10.15 15.43 13.82
Smp_199910.1 0 -4.69 -0.28 4.44 3.98
Smp_200750.1 0 1.72 7.25 10.11 8.83
Smp_205270.1 0 0.71 -0.40 10.02 9.83

Pearson Correlation Coefficient Data - Download data


Compared Gene Gene Pearson Correlation Value p-value B.-H. adjusted p-value
Smp_199910.1 Smp_045200.1 0.91 1.44e-06 6.91e-05
Smp_058660.1 Smp_199910.1 0.95 2.32e-08 4.02e-06
Smp_199910.1 Smp_082580.1 0.91 1.87e-06 8.32e-05
Smp_199910.1 Smp_084270.1 0.90 2.80e-06 1.00e-04
Smp_199910.1 Smp_123200.1 0.94 8.04e-08 9.32e-06
Smp_199910.1 Smp_125210.1 0.91 2.20e-06 9.31e-05
Smp_199910.1 Smp_134960.1 0.92 1.17e-06 5.97e-05
Smp_137320.1 Smp_199910.1 0.96 2.51e-09 9.24e-07
Smp_141680.1 Smp_199910.1 0.94 1.31e-07 1.30e-05
Smp_199910.1 Smp_145400.1 0.91 2.12e-06 9.06e-05
Smp_151120.1 Smp_199910.1 0.93 3.90e-07 2.76e-05
Smp_163940.1 Smp_199910.1 0.90 3.72e-06 1.00e-04
Smp_170280.1 Smp_199910.1 0.93 2.18e-07 1.84e-05
Smp_194960.1 Smp_199910.1 0.90 3.65e-06 1.00e-04
Smp_199910.1 Smp_194970.1 0.90 4.28e-06 1.00e-04
Smp_200750.1 Smp_199910.1 0.93 4.82e-07 3.20e-05
Smp_199910.1 Smp_205270.1 0.90 2.80e-06 1.00e-04