Schistosoma mansoni lncRNAs Database



This site contains the web resource described in the paper "Atlas of Schistosoma mansoni long non-coding RNAs and their expression correlation to protein-coding genes" (2018) by Elton J. R. Vasconcelos, Vinícius C. Mesel, Lucas F. daSilva, David S. Pires, Guilherme M. Lavezzo, Adriana S. A. Pereira, Murilo S. Amaral and Sergio Verjovski-Almeida, Database, Volume 2018: bay068, https://doi.org/10.1093/database/bay068.


Based on data from Vasconcelos, EJR et al., The Schistosoma mansoni genome encodes thousands of long noncoding RNAs predicted to be functional at different parasite life-cycle stages. Scientific Reports 7: 10508, 2017.


Smp_199840.1 Data


Fig. 6A for with r ≥ 0.8 or r ≤ -0.8.

Expression Fold Change Data [log2(FC)] - Download data


Gene ID Cerc 3S 24S Male Female
SmLINC02888-IBu 0 -1.98 -4.28 -4.50 -5.76
SmLINC06128-IBu 0 -1.91 -4.82 -10.42 -10.44
SmLINC06892-IBu 0 -2.10 -3.44 -12.52 -12.52
Smp_199840.1 0 -1.81 -3.67 -4.48 -5.82

Pearson Correlation Coefficient Data - Download data


Compared Gene Gene Pearson Correlation Value p-value B.-H. adjusted p-value
Smp_199840.1 SmLINC02888-IBu 0.80 3.00e-04 3.10e-03
Smp_199840.1 SmLINC06128-IBu 0.81 2.00e-04 2.60e-03
Smp_199840.1 SmLINC06892-IBu 0.90 3.19e-06 1.00e-04
Fig. S5 for with r ≥ 0.9 or r ≤ -0.9.

Expression Fold Change Data [log2(FC)] - Download data


Gene ID Cerc 3S 24S Male Female
Smp_032990.1 0 -1.53 -9.49 -13.75 -8.21
Smp_066010.1 0 -2.34 -10.90 -6.48 -4.88
Smp_085290.3 0 -2.11 -9.33 -13.07 -9.78
Smp_116760.1 0 -1.93 -4.95 -12.63 -10.20
Smp_140680.2 0 -1.06 -11.75 -8.40 -8.18
Smp_183020.1 0 -2.31 -1.58 -15.79 -15.79
Smp_183020.6 0 -2.31 -1.58 -15.79 -15.79
Smp_184460.1 0 -2.24 -5.26 -13.63 -13.63
Smp_185350.1 0 -1.75 -2.87 -10.48 -10.48
Smp_185360.1 0 -2.43 -5.85 -12.83 -12.83
Smp_186130.2 0 -1.40 -3.75 -10.97 -9.77
Smp_199840.1 0 -1.81 -3.67 -4.48 -5.82
Smp_202140.1 0 -1.27 -3.64 -10.44 -10.44
Smp_206150.1 0 -1.95 -4.12 -11.47 -11.47

Pearson Correlation Coefficient Data - Download data


Compared Gene Gene Pearson Correlation Value p-value B.-H. adjusted p-value
Smp_032990.1 Smp_199840.1 0.97 4.42e-10 3.02e-07
Smp_066010.1 Smp_199840.1 0.95 1.63e-08 3.17e-06
Smp_199840.1 Smp_085290.3 0.94 1.70e-07 1.55e-05
Smp_116760.1 Smp_199840.1 0.94 1.69e-07 1.55e-05
Smp_140680.2 Smp_199840.1 0.90 3.35e-06 1.00e-04
Smp_183020.1 Smp_199840.1 0.92 6.06e-07 3.76e-05
Smp_183020.6 Smp_199840.1 0.92 6.06e-07 3.76e-05
Smp_184460.1 Smp_199840.1 0.94 1.43e-07 1.38e-05
Smp_185350.1 Smp_199840.1 0.93 2.50e-07 2.03e-05
Smp_185360.1 Smp_199840.1 0.93 3.38e-07 2.50e-05
Smp_186130.2 Smp_199840.1 0.92 8.63e-07 4.81e-05
Smp_202140.1 Smp_199840.1 0.92 7.31e-07 4.28e-05
Smp_206150.1 Smp_199840.1 0.97 8.29e-10 4.52e-07