Schistosoma mansoni lncRNAs Database


This site contains the web resource described in the paper "Atlas of Schistosoma mansoni long non-coding RNAs and their expression correlation to protein-coding genes" (2018) by Elton J. R. Vasconcelos, Vinícius C. Mesel, Lucas F. daSilva, David S. Pires, Guilherme M. Lavezzo, Adriana S. A. Pereira, Murilo S. Amaral and Sergio Verjovski-Almeida, Database, Volume 2018: bay068, https://doi.org/10.1093/database/bay068.

Based on data from Vasconcelos, EJR et al., The Schistosoma mansoni genome encodes thousands of long noncoding RNAs predicted to be functional at different parasite life-cycle stages. Scientific Reports 7: 10508, 2017.

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Smp_199800.1 Data

Correlation between Smp_199800.1 Protein Coding Gene and neighbor SmLINC (neighbor to up to two Smps upstream or two Smps downstream of the SmLINC in the genome) or SmLINCs with putative trans-acting mechanisms, with correlation coefficient r ≥ 0.5 or r ≤ -0.5 [ Click Here for Details ]

Fig. 7A S3 for with r ≥ 0.5 or r ≤ -0.5.

Expression Fold Change Data [log2(FC)] - Download data

Pearson Correlation Coefficient Data - Download data

Correlation between Smp_199800.1 and robust SmLINCs (presenting four functional traits) across life cycle stages, with correlation coefficient r ≥ 0.8 or r ≤ -0.8 [ Click Here for Details ]

Fig. 6A for with r ≥ 0.8 or r ≤ -0.8.

Expression Fold Change Data [log2(FC)] - Download data

Gene ID Cerc 3S 24S Male Female
SmLINC00004-IBu 0 0.00 0.00 9.26 10.68
SmLINC00171-IBu 0 -0.59 -5.27 3.90 3.47
SmLINC00266-IBu 0 2.25 3.99 6.14 6.95
SmLINC00369-IBu 0 1.32 0.40 6.04 6.28
SmLINC00376-IBu 0 1.87 -0.39 3.34 3.93
SmLINC00477-IBu 0 -1.14 -0.46 4.37 3.06
SmLINC00484-IBu 0 -0.02 2.64 6.82 5.24
SmLINC00525-IBu 0 -1.18 -2.31 1.77 2.53
SmLINC00548-IBu 0 1.58 1.11 7.48 7.20
SmLINC00633-IBu 0 1.89 0.00 7.59 7.46
SmLINC00769-IBu 0 0.00 0.00 11.31 9.29
SmLINC01066-IBu 0 0.76 1.52 6.33 5.39
SmLINC01084-IBu 0 -4.17 -2.32 2.88 3.57
SmLINC01122-IBu 0 0.00 0.00 6.36 6.32
SmLINC01139-IBu 0 -1.59 -5.89 3.96 3.29
SmLINC01171-IBu 0 4.66 1.75 6.39 6.26
SmLINC01231-IBu 0 0.31 -3.75 7.29 6.55
SmLINC01431-IBu 0 4.28 4.33 10.35 10.82
SmLINC01433-IBu 0 5.33 4.84 12.27 11.18
SmLINC01435-IBu 0 -2.57 1.02 6.17 5.55
SmLINC01538-IBu 0 0.00 3.62 10.85 10.43
SmLINC01569-IBu 0 -0.90 -0.28 4.61 4.49
SmLINC01733-IBu 0 0.89 2.09 5.78 5.68
SmLINC01746-IBu 0 -3.80 -0.66 2.43 2.13
SmLINC02084-IBu 0 2.05 2.87 9.42 9.88
SmLINC02255-IBu 0 -0.86 -1.80 -3.72 -4.71
SmLINC02545-IBu 0 3.54 1.98 7.53 8.45
SmLINC02546-IBu 0 1.90 1.01 8.94 9.30
SmLINC03108-IBu 0 1.12 -0.64 3.64 3.93
SmLINC03236-IBu 0 5.69 1.95 7.32 7.27
SmLINC03309-IBu 0 -0.28 0.72 5.03 4.47
SmLINC03542-IBu 0 3.10 -2.22 9.17 7.75
SmLINC03693-IBu 0 0.04 0.11 4.65 4.21
SmLINC03849-IBu 0 -0.25 -0.95 -4.04 -4.58
SmLINC03927-IBu 0 0.00 3.30 7.68 8.27
SmLINC04345-IBu 0 -0.21 -0.00 6.97 4.53
SmLINC04421-IBu 0 -0.40 -1.98 2.75 3.71
SmLINC04423-IBu 0 -0.15 -1.31 2.28 3.30
SmLINC04432-IBu 0 0.66 2.72 5.35 5.03
SmLINC04475-IBu 0 -0.34 2.17 4.09 3.42
SmLINC04478-IBu 0 -1.64 -5.06 4.33 4.42
SmLINC04521-IBu 0 0.00 2.57 11.17 11.06
SmLINC04637-IBu 0 5.61 0.00 9.87 8.40
SmLINC04663-IBu 0 -2.56 -3.27 2.68 1.54
SmLINC04684-IBu 0 0.48 -0.86 3.35 3.38
SmLINC05147-IBu 0 -2.38 -0.94 2.89 2.87
SmLINC05171-IBu 0 -0.19 -0.55 5.90 3.90
SmLINC05258-IBu 0 0.71 -0.55 3.56 3.34
SmLINC05604-IBu 0 3.08 0.00 9.77 11.08
SmLINC06010-IBu 0 1.91 2.45 5.62 4.62
SmLINC06024-IBu 0 -2.97 -2.19 1.09 1.92
SmLINC06221-IBu 0 2.16 3.44 6.39 5.80
SmLINC06415-IBu 0 0.00 5.09 7.86 8.72
SmLINC06418-IBu 0 -2.45 2.43 6.45 5.75
SmLINC06444-IBu 0 -1.92 -0.19 3.94 3.05
SmLINC06449-IBu 0 2.33 4.31 7.30 6.63
SmLINC06536-IBu 0 -3.65 0.03 5.24 4.25
SmLINC06543-IBu 0 -0.52 0.39 3.89 3.37
Smp_199800.1 0 0.96 1.23 4.82 5.13

Pearson Correlation Coefficient Data - Download data

Compared Gene Gene Pearson Correlation Value p-value B.-H. adjusted p-value
Smp_199800.1 SmLINC00004-IBu 0.86 3.85e-05 7.00e-04
Smp_199800.1 SmLINC00171-IBu 0.88 1.46e-05 3.00e-04
Smp_199800.1 SmLINC00266-IBu 0.83 9.90e-05 1.40e-03
Smp_199800.1 SmLINC00369-IBu 0.91 1.20e-06 5.87e-05
Smp_199800.1 SmLINC00376-IBu 0.89 7.84e-06 2.00e-04
Smp_199800.1 SmLINC00477-IBu 0.85 5.77e-05 9.00e-04
Smp_199800.1 SmLINC00484-IBu 0.80 3.00e-04 3.30e-03
Smp_199800.1 SmLINC00525-IBu 0.93 4.74e-07 3.03e-05
Smp_199800.1 SmLINC00548-IBu 0.97 8.10e-10 4.12e-07
Smp_199800.1 SmLINC00633-IBu 0.94 6.55e-08 7.67e-06
Smp_199800.1 SmLINC00769-IBu 0.82 1.00e-04 2.10e-03
Smp_199800.1 SmLINC01066-IBu 0.87 1.52e-05 3.00e-04
Smp_199800.1 SmLINC01084-IBu 0.95 5.11e-08 6.47e-06
Smp_199800.1 SmLINC01122-IBu 0.91 1.20e-06 5.85e-05
Smp_199800.1 SmLINC01139-IBu 0.91 1.74e-06 7.61e-05
Smp_199800.1 SmLINC01171-IBu 0.88 1.13e-05 2.00e-04
Smp_199800.1 SmLINC01231-IBu 0.88 1.16e-05 2.00e-04
Smp_199800.1 SmLINC01431-IBu 0.97 4.67e-10 2.88e-07
Smp_199800.1 SmLINC01433-IBu 0.83 1.00e-04 1.60e-03
Smp_199800.1 SmLINC01435-IBu 0.91 1.64e-06 7.29e-05
Smp_199800.1 SmLINC01538-IBu 0.94 1.31e-07 1.23e-05
Smp_199800.1 SmLINC01569-IBu 0.92 5.68e-07 3.44e-05
Smp_199800.1 SmLINC01733-IBu 0.90 3.18e-06 1.00e-04
Smp_199800.1 SmLINC01746-IBu 0.91 1.51e-06 6.90e-05
Smp_199800.1 SmLINC02084-IBu 0.96 1.10e-08 2.28e-06
Smp_199800.1 SmLINC02255-IBu -0.80 3.00e-04 3.30e-03
Smp_199800.1 SmLINC02545-IBu 0.90 3.50e-06 1.00e-04
Smp_199800.1 SmLINC02546-IBu 0.97 2.56e-10 1.95e-07
Smp_199800.1 SmLINC03108-IBu 0.88 1.26e-05 3.00e-04
Smp_199800.1 SmLINC03236-IBu 0.83 9.29e-05 1.30e-03
Smp_199800.1 SmLINC03309-IBu 0.94 1.61e-07 1.43e-05
Smp_199800.1 SmLINC03542-IBu 0.82 1.00e-04 1.70e-03
Smp_199800.1 SmLINC03693-IBu 0.91 1.20e-06 5.87e-05
Smp_199800.1 SmLINC03849-IBu -0.83 1.00e-04 1.60e-03
Smp_199800.1 SmLINC03927-IBu 0.95 1.65e-08 3.00e-06
Smp_199800.1 SmLINC04345-IBu 0.81 2.00e-04 2.60e-03
Smp_199800.1 SmLINC04421-IBu 0.89 6.70e-06 1.00e-04
Smp_199800.1 SmLINC04423-IBu 0.85 5.86e-05 9.00e-04
Smp_199800.1 SmLINC04432-IBu 0.91 1.44e-06 6.65e-05
Smp_199800.1 SmLINC04475-IBu 0.88 9.92e-06 2.00e-04
Smp_199800.1 SmLINC04478-IBu 0.90 4.85e-06 1.00e-04
Smp_199800.1 SmLINC04521-IBu 0.88 1.33e-05 3.00e-04
Smp_199800.1 SmLINC04637-IBu 0.81 2.00e-04 2.60e-03
Smp_199800.1 SmLINC04663-IBu 0.85 4.30e-05 7.00e-04
Smp_199800.1 SmLINC04684-IBu 0.95 4.23e-08 5.69e-06
Smp_199800.1 SmLINC05147-IBu 0.92 5.69e-07 3.44e-05
Smp_199800.1 SmLINC05171-IBu 0.82 1.00e-04 2.10e-03
Smp_199800.1 SmLINC05258-IBu 0.92 9.37e-07 4.90e-05
Smp_199800.1 SmLINC05604-IBu 0.84 7.51e-05 1.10e-03
Smp_199800.1 SmLINC06010-IBu 0.86 2.82e-05 5.00e-04
Smp_199800.1 SmLINC06024-IBu 0.90 2.80e-06 1.00e-04
Smp_199800.1 SmLINC06221-IBu 0.90 4.78e-06 1.00e-04
Smp_199800.1 SmLINC06415-IBu 0.87 2.21e-05 4.00e-04
Smp_199800.1 SmLINC06418-IBu 0.84 6.69e-05 1.00e-03
Smp_199800.1 SmLINC06444-IBu 0.90 3.78e-06 1.00e-04
Smp_199800.1 SmLINC06449-IBu 0.84 8.15e-05 1.20e-03
Smp_199800.1 SmLINC06536-IBu 0.87 1.76e-05 4.00e-04
Smp_199800.1 SmLINC06543-IBu 0.91 1.61e-06 7.22e-05

Correlation between Smp_199800.1 and highly differentially expressed Smps (log2 FC ≥ 10 in at least one developmental stage) and/or SmLINCs, with correlation coefficient r ≥ 0.9 or r ≤ -0.9 [ Click Here for Details ]

Fig. S5 for with r ≥ 0.9 or r ≤ -0.9.

Expression Fold Change Data [log2(FC)] - Download data

Gene ID Cerc 3S 24S Male Female
Smp_020760.2 0 9.23 8.40 12.26 12.26
Smp_031040.1 0 8.57 0.03 12.35 12.40
Smp_031770.10 0 0.00 0.00 10.09 10.31
Smp_033260.1 0 0.00 0.00 11.56 12.33
Smp_034980.2 0 8.75 0.00 11.30 11.03
Smp_040970.2 0 9.27 9.42 14.46 14.83
Smp_050350.3 0 7.35 7.57 12.17 13.18
Smp_051210.3 0 3.15 11.52 13.74 13.72
Smp_052280.2 0 4.60 9.23 11.90 12.79
Smp_055340.2 0 8.73 10.47 12.13 12.52
Smp_056460.1 0 0.00 0.00 11.24 12.03
Smp_058660.1 0 1.16 3.97 10.53 10.53
Smp_068270.1 0 0.21 0.34 12.30 11.22
Smp_079420.1 0 6.65 2.37 11.69 12.23
Smp_094050.1 0 0.00 6.75 11.34 12.21
Smp_095410.1 0 0.00 0.00 10.39 11.31
Smp_137000.2 0 7.58 1.98 11.35 11.89
Smp_137320.1 0 0.00 5.10 10.68 10.40
Smp_141680.1 0 1.93 6.74 10.30 9.72
Smp_145400.1 0 4.59 7.69 11.32 11.39
Smp_150980.2 0 7.91 9.49 12.91 12.48
Smp_151120.1 0 2.34 3.50 10.04 9.86
Smp_169670.1 0 0.00 8.19 10.09 10.85
Smp_170280.1 0 2.81 5.87 10.21 9.37
Smp_172480.1 0 4.53 4.98 10.04 9.89
Smp_172960.1 0 3.27 6.54 14.72 15.13
Smp_192780.1 0 1.26 4.06 9.03 10.25
Smp_194860.1 0 3.09 7.72 14.07 14.58
Smp_199800.1 0 0.96 1.23 4.82 5.13
Smp_203090.1 0 0.00 0.00 10.35 10.67
Smp_205270.1 0 0.71 -0.40 10.02 9.83

Pearson Correlation Coefficient Data - Download data

Compared Gene Gene Pearson Correlation Value p-value B.-H. adjusted p-value
Smp_020760.2 Smp_199800.1 0.92 1.00e-06 5.34e-05
Smp_031040.1 Smp_199800.1 0.93 2.77e-07 2.18e-05
Smp_199800.1 Smp_031770.10 0.95 3.55e-08 5.36e-06
Smp_033260.1 Smp_199800.1 0.92 7.34e-07 4.29e-05
Smp_199800.1 Smp_034980.2 0.93 2.05e-07 1.77e-05
Smp_199800.1 Smp_040970.2 0.93 2.88e-07 2.24e-05
Smp_050350.3 Smp_199800.1 0.91 2.16e-06 9.18e-05
Smp_199800.1 Smp_051210.3 0.91 2.12e-06 9.08e-05
Smp_199800.1 Smp_052280.2 0.91 1.95e-06 8.54e-05
Smp_199800.1 Smp_055340.2 0.93 4.62e-07 3.11e-05
Smp_199800.1 Smp_056460.1 0.94 1.04e-07 1.11e-05
Smp_058660.1 Smp_199800.1 0.95 1.83e-08 3.42e-06
Smp_199800.1 Smp_068270.1 0.91 1.94e-06 8.51e-05
Smp_199800.1 Smp_079420.1 0.93 2.25e-07 1.88e-05
Smp_199800.1 Smp_094050.1 0.90 3.64e-06 1.00e-04
Smp_199800.1 Smp_095410.1 0.96 4.60e-09 1.36e-06
Smp_199800.1 Smp_137000.2 0.94 1.42e-07 1.38e-05
Smp_137320.1 Smp_199800.1 0.91 1.50e-06 7.11e-05
Smp_199800.1 Smp_141680.1 0.91 2.17e-06 9.22e-05
Smp_199800.1 Smp_145400.1 0.98 1.56e-10 1.55e-07
Smp_150980.2 Smp_199800.1 0.92 5.87e-07 3.67e-05
Smp_199800.1 Smp_151120.1 0.94 1.81e-07 1.63e-05
Smp_199800.1 Smp_169670.1 0.90 4.27e-06 1.00e-04
Smp_199800.1 Smp_170280.1 0.91 1.34e-06 6.58e-05
Smp_172480.1 Smp_199800.1 0.95 4.76e-08 6.53e-06
Smp_199800.1 Smp_172960.1 0.96 5.28e-09 1.49e-06
Smp_199800.1 Smp_192780.1 0.93 4.34e-07 2.97e-05
Smp_194860.1 Smp_199800.1 0.94 7.29e-08 8.72e-06
Smp_203090.1 Smp_199800.1 0.93 2.78e-07 2.19e-05
Smp_199800.1 Smp_205270.1 0.94 1.50e-07 1.42e-05