Schistosoma mansoni lncRNAs Database



This site contains the web resource described in the paper "Atlas of Schistosoma mansoni long non-coding RNAs and their expression correlation to protein-coding genes" (2018) by Elton J. R. Vasconcelos, Vinícius C. Mesel, Lucas F. daSilva, David S. Pires, Guilherme M. Lavezzo, Adriana S. A. Pereira, Murilo S. Amaral and Sergio Verjovski-Almeida, Database, Volume 2018: bay068, https://doi.org/10.1093/database/bay068.


Based on data from Vasconcelos, EJR et al., The Schistosoma mansoni genome encodes thousands of long noncoding RNAs predicted to be functional at different parasite life-cycle stages. Scientific Reports 7: 10508, 2017.


Smp_199580.1 Data


Fig. 6A for with r ≥ 0.8 or r ≤ -0.8.

Expression Fold Change Data [log2(FC)] - Download data


Gene ID Cerc 3S 24S Male Female
SmLINC02376-IBu 0 0.00 0.00 5.89 7.89
SmLINC04235-IBu 0 0.00 1.32 6.44 8.84
SmLINC06239-IBu 0 -0.42 0.14 2.33 5.24
Smp_199580.1 0 0.00 3.75 4.57 6.47

Pearson Correlation Coefficient Data - Download data


Compared Gene Gene Pearson Correlation Value p-value B.-H. adjusted p-value
Smp_199580.1 SmLINC02376-IBu 0.82 1.00e-04 2.10e-03
Smp_199580.1 SmLINC04235-IBu 0.82 1.00e-04 1.80e-03
Smp_199580.1 SmLINC06239-IBu 0.89 8.52e-06 2.00e-04
Fig. S5 for with r ≥ 0.9 or r ≤ -0.9.

Expression Fold Change Data [log2(FC)] - Download data


Gene ID Cerc 3S 24S Male Female
Smp_000410.1 0 0.05 -0.39 7.44 13.38
Smp_000420.1 0 0.46 -1.29 3.81 10.40
Smp_033250.1 0 1.88 1.47 7.41 14.66
Smp_058160.1 0 6.89 3.04 6.00 10.33
Smp_077920.1 0 4.92 0.00 5.39 11.83
Smp_131110.2 0 0.00 2.23 5.86 12.58
Smp_144440.1 0 7.66 6.96 9.39 14.48
Smp_155310.1 0 0.00 0.00 6.53 13.34
Smp_155310.2 0 0.00 0.00 4.10 11.17
Smp_175560.1 0 1.88 2.67 7.60 12.31
Smp_191910.1 0 -4.11 -4.11 6.38 13.11
Smp_199580.1 0 0.00 3.75 4.57 6.47

Pearson Correlation Coefficient Data - Download data


Compared Gene Gene Pearson Correlation Value p-value B.-H. adjusted p-value
Smp_199580.1 Smp_000410.1 0.92 1.17e-06 5.98e-05
Smp_199580.1 Smp_000420.1 0.93 3.76e-07 2.69e-05
Smp_199580.1 Smp_033250.1 0.92 7.89e-07 4.51e-05
Smp_199580.1 Smp_058160.1 0.92 9.56e-07 5.17e-05
Smp_199580.1 Smp_077920.1 0.91 1.75e-06 7.93e-05
Smp_199580.1 Smp_131110.2 0.93 2.44e-07 1.99e-05
Smp_199580.1 Smp_144440.1 0.90 4.47e-06 1.00e-04
Smp_199580.1 Smp_155310.1 0.92 7.08e-07 4.18e-05
Smp_199580.1 Smp_155310.2 0.90 2.63e-06 1.00e-04
Smp_199580.1 Smp_175560.1 0.93 4.83e-07 3.21e-05
Smp_199580.1 Smp_191910.1 0.92 9.38e-07 5.10e-05