Schistosoma mansoni lncRNAs Database

This site contains the web resource described in the paper "Atlas of Schistosoma mansoni long non-coding RNAs and their expression correlation to protein-coding genes" (2018) by Elton J. R. Vasconcelos, Vinícius C. Mesel, Lucas F. daSilva, David S. Pires, Guilherme M. Lavezzo, Adriana S. A. Pereira, Murilo S. Amaral and Sergio Verjovski-Almeida, Database, Volume 2018: bay068, https://doi.org/10.1093/database/bay068.

Based on data from Vasconcelos, EJR et al., The Schistosoma mansoni genome encodes thousands of long noncoding RNAs predicted to be functional at different parasite life-cycle stages. Scientific Reports 7: 10508, 2017.

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Smp_199230.1 Data

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Correlation between Smp_199230.1 Protein Coding Gene and neighbor SmLINC (neighbor to up to two Smps upstream or two Smps downstream of the SmLINC in the genome) or SmLINCs with putative trans-acting mechanisms, with correlation coefficient r ≥ 0.5 or r ≤ -0.5 [ Click Here for Details ]

Expression Fold Change Data [log₂(FC)] - Download data

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Pearson Correlation Coefficient Data - Download data

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Correlation between Smp_199230.1 and robust SmLINCs (presenting four functional traits) across life cycle stages, with correlation coefficient r ≥ 0.8 or r ≤ -0.8 [ Click Here for Details ]

Expression Fold Change Data [log₂(FC)] - Download data

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Pearson Correlation Coefficient Data - Download data

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Correlation between Smp_199230.1 and highly differentially expressed Smps (log2 FC ≥ 10 in at least one developmental stage) and/or SmLINCs, with correlation coefficient r ≥ 0.9 or r ≤ -0.9 [ Click Here for Details ]

Expression Fold Change Data [log₂(FC)] - Download data

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Gene ID	Cerc	3S	24S	Male	Female
Smp_116760.1	0	-1.93	-4.95	-12.63	-10.20
Smp_186130.2	0	-1.40	-3.75	-10.97	-9.77
Smp_199230.1	0	-8.78	-8.78	-3.51	-8.10

Pearson Correlation Coefficient Data - Download data

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Compared Gene	Gene	Pearson Correlation Value	p-value	B.-H. adjusted p-value
Smp_116760.1	Smp_199230.1	0.93	3.21e-07	2.42e-05
Smp_199230.1	Smp_186130.2	0.91	1.60e-06	7.46e-05