Schistosoma mansoni lncRNAs Database



This site contains the web resource described in the paper "Atlas of Schistosoma mansoni long non-coding RNAs and their expression correlation to protein-coding genes" (2018) by Elton J. R. Vasconcelos, Vinícius C. Mesel, Lucas F. daSilva, David S. Pires, Guilherme M. Lavezzo, Adriana S. A. Pereira, Murilo S. Amaral and Sergio Verjovski-Almeida, Database, Volume 2018: bay068, https://doi.org/10.1093/database/bay068.


Based on data from Vasconcelos, EJR et al., The Schistosoma mansoni genome encodes thousands of long noncoding RNAs predicted to be functional at different parasite life-cycle stages. Scientific Reports 7: 10508, 2017.


Smp_197430.1 Data


Fig. 6A for with r ≥ 0.8 or r ≤ -0.8.

Expression Fold Change Data [log2(FC)] - Download data


Gene ID Cerc 3S 24S Male Female
SmLINC00133-IBu 0 0.41 -1.72 -5.79 -6.76
SmLINC03930-IBu 0 -0.18 -2.11 -8.92 -4.64
Smp_197430.1 0 -1.10 -5.36 -5.36 -2.98

Pearson Correlation Coefficient Data - Download data


Compared Gene Gene Pearson Correlation Value p-value B.-H. adjusted p-value
Smp_197430.1 SmLINC00133-IBu 0.80 3.00e-04 3.30e-03
Smp_197430.1 SmLINC03930-IBu 0.85 4.92e-05 8.00e-04
Fig. S5 for with r ≥ 0.9 or r ≤ -0.9.

Expression Fold Change Data [log2(FC)] - Download data


Gene ID Cerc 3S 24S Male Female
Smp_032970.1 0 -0.24 -2.98 -11.57 -7.79
Smp_168080.2 0 -1.01 -12.06 -12.06 -12.06
Smp_197430.1 0 -1.10 -5.36 -5.36 -2.98
Smp_201750.1 0 -0.56 -4.79 -7.34 -11.47

Pearson Correlation Coefficient Data - Download data


Compared Gene Gene Pearson Correlation Value p-value B.-H. adjusted p-value
Smp_032970.1 Smp_197430.1 0.91 1.37e-06 6.69e-05
Smp_197430.1 Smp_168080.2 0.91 2.45e-06 1.00e-04
Smp_201750.1 Smp_197430.1 0.91 2.31e-06 9.64e-05