Schistosoma mansoni lncRNAs Database



This site contains the web resource described in the paper "Atlas of Schistosoma mansoni long non-coding RNAs and their expression correlation to protein-coding genes" (2018) by Elton J. R. Vasconcelos, Vinícius C. Mesel, Lucas F. daSilva, David S. Pires, Guilherme M. Lavezzo, Adriana S. A. Pereira, Murilo S. Amaral and Sergio Verjovski-Almeida, Database, Volume 2018: bay068, https://doi.org/10.1093/database/bay068.


Based on data from Vasconcelos, EJR et al., The Schistosoma mansoni genome encodes thousands of long noncoding RNAs predicted to be functional at different parasite life-cycle stages. Scientific Reports 7: 10508, 2017.


Smp_197150.1 Data


Fig. 7A S3 for with r ≥ 0.5 or r ≤ -0.5.

Expression Fold Change Data [log2(FC)] - Download data


Gene ID Cerc 3S 24S Male Female
SmLINC02026-IBu 0 -0.31 0.73 -7.72 -1.09
SmLINC04430-IBu 0 1.35 4.06 1.40 0.01
Smp_197150.1 0 -0.08 0.36 -3.43 -4.33

Pearson Correlation Coefficient Data - Download data


Compared Gene Gene Pearson Correlation Value p-value B.-H. adjusted p-value
Smp_197150.1 SmLINC02026-IBu 0.61 1.48e-02 4.61e-02
Smp_197150.1 SmLINC04430-IBu 0.73 1.90e-03 1.04e-02
Fig. 6A for with r ≥ 0.8 or r ≤ -0.8.

Expression Fold Change Data [log2(FC)] - Download data


Gene ID Cerc 3S 24S Male Female
SmLINC00372-IBu 0 1.42 3.02 -1.83 -2.95
SmLINC01316-IBu 0 -0.35 0.57 -11.60 -4.95
SmLINC01979-IBu 0 1.86 0.63 -5.36 -5.36
SmLINC02646-IBu 0 0.70 0.79 -6.84 -2.55
SmLINC06490-IBu 0 -0.11 0.31 -3.82 -4.89
SmLINC06646-IBu 0 1.59 1.70 -7.49 -7.49
SmLINC06700-IBu 0 2.95 4.73 1.69 -0.46
SmLINC06836-IBu 0 5.91 8.23 0.00 0.00
Smp_197150.1 0 -0.08 0.36 -3.43 -4.33

Pearson Correlation Coefficient Data - Download data


Compared Gene Gene Pearson Correlation Value p-value B.-H. adjusted p-value
Smp_197150.1 SmLINC00372-IBu 0.85 5.34e-05 8.00e-04
Smp_197150.1 SmLINC01316-IBu 0.95 4.24e-08 5.70e-06
Smp_197150.1 SmLINC01979-IBu 0.80 2.00e-04 3.00e-03
Smp_197150.1 SmLINC02646-IBu 0.94 1.39e-07 1.29e-05
Smp_197150.1 SmLINC06490-IBu 0.84 7.24e-05 1.10e-03
Smp_197150.1 SmLINC06646-IBu 0.91 2.11e-06 8.74e-05
Smp_197150.1 SmLINC06700-IBu 0.85 4.98e-05 8.00e-04
Smp_197150.1 SmLINC06836-IBu 0.80 2.00e-04 3.10e-03
Fig. S5 for with r ≥ 0.9 or r ≤ -0.9.

Expression Fold Change Data [log2(FC)] - Download data


Gene ID Cerc 3S 24S Male Female
Smp_017650.1 0 9.51 10.68 -7.98 0.00
Smp_059340.3 0 0.76 1.23 -11.82 -11.82
Smp_062610.2 0 -1.05 -0.32 -6.81 -10.38
Smp_168800.1 0 0.13 -0.51 -10.46 -10.46
Smp_197150.1 0 -0.08 0.36 -3.43 -4.33
Smp_200120.1 0 0.50 0.80 -8.32 -11.63

Pearson Correlation Coefficient Data - Download data


Compared Gene Gene Pearson Correlation Value p-value B.-H. adjusted p-value
Smp_197150.1 Smp_017650.1 0.90 2.88e-06 1.00e-04
Smp_197150.1 Smp_059340.3 0.94 9.67e-08 1.05e-05
Smp_062610.2 Smp_197150.1 0.93 4.25e-07 2.93e-05
Smp_197150.1 Smp_168800.1 0.93 2.26e-07 1.89e-05
Smp_200120.1 Smp_197150.1 0.91 1.21e-06 6.12e-05