This site contains the web resource described in the paper "Atlas of Schistosoma mansoni long non-coding RNAs and their expression correlation to protein-coding genes" (2018) by Elton J. R. Vasconcelos, Vinícius C. Mesel, Lucas F. daSilva, David S. Pires, Guilherme M. Lavezzo, Adriana S. A. Pereira, Murilo S. Amaral and Sergio Verjovski-Almeida, Database, Volume 2018: bay068, https://doi.org/10.1093/database/bay068.

Based on data from Vasconcelos, EJR et al., The Schistosoma mansoni genome encodes thousands of long noncoding RNAs predicted to be functional at different parasite life-cycle stages. Scientific Reports 7: 10508, 2017.

Smp_196980.1 Data

Correlation between Smp_196980.1 Protein Coding Gene and neighbor SmLINC (neighbor to up to two Smps upstream or two Smps downstream of the SmLINC in the genome) or SmLINCs with putative trans-acting mechanisms, with correlation coefficient r ≥ 0.5 or r ≤ -0.5 [ Click Here for Details ]

Fig. 7A S3 for with r ≥ 0.5 or r ≤ -0.5.

Expression Fold Change Data [log₂(FC)] - Download data

Pearson Correlation Coefficient Data - Download data

Correlation between Smp_196980.1 and robust SmLINCs (presenting four functional traits) across life cycle stages, with correlation coefficient r ≥ 0.8 or r ≤ -0.8 [ Click Here for Details ]

Expression Fold Change Data [log₂(FC)] - Download data

Gene ID	3S	24S	Male	Female
SmLINC05632-IBu	4.56	6.06	7.28	6.53
SmLINC05870-IBu	0.25	4.65	5.77	4.71
Smp_196980.1	1.13	5.96	5.33	4.01

Pearson Correlation Coefficient Data - Download data

Compared Gene	Gene	Pearson Correlation Value	p-value	B.-H. adjusted p-value
Smp_196980.1	SmLINC05632-IBu	0.84	7.07e-05	1.00e-03
Smp_196980.1	SmLINC05870-IBu	0.85	5.07e-05	8.00e-04

Correlation between Smp_196980.1 and highly differentially expressed Smps (log2 FC ≥ 10 in at least one developmental stage) and/or SmLINCs, with correlation coefficient r ≥ 0.9 or r ≤ -0.9 [ Click Here for Details ]

Schistosoma mansoni lncRNAs Database

Smp_196980.1 Data

Correlation between Smp_196980.1 Protein Coding Gene and neighbor SmLINC (neighbor to up to two Smps upstream or two Smps downstream of the SmLINC in the genome) or SmLINCs with putative trans-acting mechanisms, with correlation coefficient r ≥ 0.5 or r ≤ -0.5 [ Click Here for Details ]

Expression Fold Change Data [log2(FC)] - Download data

Pearson Correlation Coefficient Data - Download data

Correlation between Smp_196980.1 and robust SmLINCs (presenting four functional traits) across life cycle stages, with correlation coefficient r ≥ 0.8 or r ≤ -0.8 [ Click Here for Details ]

Expression Fold Change Data [log2(FC)] - Download data

Pearson Correlation Coefficient Data - Download data

Correlation between Smp_196980.1 and highly differentially expressed Smps (log2 FC ≥ 10 in at least one developmental stage) and/or SmLINCs, with correlation coefficient r ≥ 0.9 or r ≤ -0.9 [ Click Here for Details ]

Expression Fold Change Data [log2(FC)] - Download data

Pearson Correlation Coefficient Data - Download data

Expression Fold Change Data [log₂(FC)] - Download data

Expression Fold Change Data [log₂(FC)] - Download data

Expression Fold Change Data [log₂(FC)] - Download data