Schistosoma mansoni lncRNAs Database



This site contains the web resource described in the paper "Atlas of Schistosoma mansoni long non-coding RNAs and their expression correlation to protein-coding genes" (2018) by Elton J. R. Vasconcelos, Vinícius C. Mesel, Lucas F. daSilva, David S. Pires, Guilherme M. Lavezzo, Adriana S. A. Pereira, Murilo S. Amaral and Sergio Verjovski-Almeida, Database, Volume 2018: bay068, https://doi.org/10.1093/database/bay068.


Based on data from Vasconcelos, EJR et al., The Schistosoma mansoni genome encodes thousands of long noncoding RNAs predicted to be functional at different parasite life-cycle stages. Scientific Reports 7: 10508, 2017.


Smp_196410.1 Data


Fig. 7A S3 for with r ≥ 0.5 or r ≤ -0.5.

Expression Fold Change Data [log2(FC)] - Download data


Gene ID Cerc 3S 24S Male Female
SmLINC04430-IBu 0 1.35 4.06 1.40 0.01
Smp_196410.1 0 0.98 1.80 -3.57 -2.94

Pearson Correlation Coefficient Data - Download data


Compared Gene Gene Pearson Correlation Value p-value B.-H. adjusted p-value
Smp_196410.1 SmLINC04430-IBu 0.81 2.00e-04 2.20e-03
Fig. 6A for with r ≥ 0.8 or r ≤ -0.8.

Expression Fold Change Data [log2(FC)] - Download data


Gene ID Cerc 3S 24S Male Female
SmLINC00372-IBu 0 1.42 3.02 -1.83 -2.95
SmLINC01316-IBu 0 -0.35 0.57 -11.60 -4.95
SmLINC02646-IBu 0 0.70 0.79 -6.84 -2.55
SmLINC04074-IBu 0 7.29 6.66 0.00 0.00
SmLINC04430-IBu 0 1.35 4.06 1.40 0.01
SmLINC05559-IBu 0 -0.72 2.59 -1.58 -1.98
SmLINC06490-IBu 0 -0.11 0.31 -3.82 -4.89
SmLINC06646-IBu 0 1.59 1.70 -7.49 -7.49
SmLINC06700-IBu 0 2.95 4.73 1.69 -0.46
SmLINC06836-IBu 0 5.91 8.23 0.00 0.00
Smp_196410.1 0 0.98 1.80 -3.57 -2.94

Pearson Correlation Coefficient Data - Download data


Compared Gene Gene Pearson Correlation Value p-value B.-H. adjusted p-value
Smp_196410.1 SmLINC00372-IBu 0.95 3.01e-08 4.51e-06
Smp_196410.1 SmLINC01316-IBu 0.94 8.39e-08 9.09e-06
Smp_196410.1 SmLINC02646-IBu 0.91 1.68e-06 7.44e-05
Smp_196410.1 SmLINC04074-IBu 0.82 1.00e-04 1.90e-03
Smp_196410.1 SmLINC04430-IBu 0.81 2.00e-04 2.70e-03
Smp_196410.1 SmLINC05559-IBu 0.86 2.58e-05 5.00e-04
Smp_196410.1 SmLINC06490-IBu 0.81 2.00e-04 2.60e-03
Smp_196410.1 SmLINC06646-IBu 0.91 2.14e-06 8.82e-05
Smp_196410.1 SmLINC06700-IBu 0.91 1.77e-06 7.70e-05
Smp_196410.1 SmLINC06836-IBu 0.93 3.06e-07 2.23e-05
Fig. S5 for with r ≥ 0.9 or r ≤ -0.9.

Expression Fold Change Data [log2(FC)] - Download data


Gene ID Cerc 3S 24S Male Female
Smp_017650.1 0 9.51 10.68 -7.98 0.00
Smp_021340.3 0 9.76 11.05 9.34 9.26
Smp_032120.1 0 0.03 1.02 -10.65 -10.65
Smp_034840.1 0 12.23 13.88 0.00 0.00
Smp_036270.3 0 1.18 2.21 -10.17 -10.17
Smp_059340.3 0 0.76 1.23 -11.82 -11.82
Smp_059530.1 0 2.86 3.32 -11.10 -11.10
Smp_062070.1 0 9.47 10.97 6.18 8.79
Smp_062610.2 0 -1.05 -0.32 -6.81 -10.38
Smp_063650.3 0 8.82 10.72 0.00 0.00
Smp_083380.2 0 9.13 10.31 0.00 0.00
Smp_084940.2 0 10.34 11.98 9.66 9.92
Smp_098370.1 0 9.63 11.25 6.43 9.48
Smp_099160.4 0 11.96 13.30 11.03 12.32
Smp_103540.1 0 11.43 12.63 8.84 9.65
Smp_159070.3 0 -0.25 1.24 -10.95 -4.48
Smp_159150.1 0 12.28 13.98 12.38 11.81
Smp_168800.1 0 0.13 -0.51 -10.46 -10.46
Smp_196410.1 0 0.98 1.80 -3.57 -2.94
Smp_200120.1 0 0.50 0.80 -8.32 -11.63

Pearson Correlation Coefficient Data - Download data


Compared Gene Gene Pearson Correlation Value p-value B.-H. adjusted p-value
Smp_196410.1 Smp_017650.1 0.96 9.42e-09 2.19e-06
Smp_196410.1 Smp_021340.3 0.92 7.63e-07 4.41e-05
Smp_196410.1 Smp_032120.1 0.97 3.24e-10 2.48e-07
Smp_196410.1 Smp_034840.1 0.96 1.08e-08 2.40e-06
Smp_196410.1 Smp_036270.3 0.95 5.72e-08 7.39e-06
Smp_196410.1 Smp_059340.3 0.98 1.55e-10 1.54e-07
Smp_059530.1 Smp_196410.1 0.94 9.36e-08 1.03e-05
Smp_196410.1 Smp_062070.1 0.94 1.84e-07 1.65e-05
Smp_062610.2 Smp_196410.1 0.94 6.53e-08 8.09e-06
Smp_196410.1 Smp_063650.3 0.92 7.93e-07 4.53e-05
Smp_196410.1 Smp_083380.2 0.95 4.07e-08 5.88e-06
Smp_196410.1 Smp_084940.2 0.95 4.29e-08 6.09e-06
Smp_196410.1 Smp_098370.1 0.93 2.77e-07 2.18e-05
Smp_196410.1 Smp_099160.4 0.90 2.73e-06 1.00e-04
Smp_103540.1 Smp_196410.1 0.96 1.36e-08 2.80e-06
Smp_196410.1 Smp_159070.3 0.94 1.38e-07 1.35e-05
Smp_196410.1 Smp_159150.1 0.90 3.20e-06 1.00e-04
Smp_196410.1 Smp_168800.1 0.93 2.72e-07 2.15e-05
Smp_200120.1 Smp_196410.1 0.92 5.75e-07 3.62e-05