Schistosoma mansoni lncRNAs Database



This site contains the web resource described in the paper "Atlas of Schistosoma mansoni long non-coding RNAs and their expression correlation to protein-coding genes" (2018) by Elton J. R. Vasconcelos, Vinícius C. Mesel, Lucas F. daSilva, David S. Pires, Guilherme M. Lavezzo, Adriana S. A. Pereira, Murilo S. Amaral and Sergio Verjovski-Almeida, Database, Volume 2018: bay068, https://doi.org/10.1093/database/bay068.


Based on data from Vasconcelos, EJR et al., The Schistosoma mansoni genome encodes thousands of long noncoding RNAs predicted to be functional at different parasite life-cycle stages. Scientific Reports 7: 10508, 2017.


Smp_196000.1 Data


Fig. 6A for with r ≥ 0.8 or r ≤ -0.8.

Expression Fold Change Data [log2(FC)] - Download data


Gene ID Cerc 3S 24S Male Female
SmLINC00554-IBu 0 -0.37 -11.45 -11.45 -2.78
SmLINC00556-IBu 0 -0.74 -2.79 -5.06 -5.28
SmLINC00787-IBu 0 1.80 -4.72 -2.61 -3.96
SmLINC01429-IBu 0 1.94 -0.56 -4.06 -6.10
SmLINC03116-IBu 0 3.51 0.92 -2.09 -5.82
SmLINC05274-IBu 0 -0.85 -1.40 -4.98 -5.55
SmLINC05840-IBu 0 1.40 -1.20 -2.41 -3.85
Smp_196000.1 0 -0.33 -2.00 -8.40 -5.93

Pearson Correlation Coefficient Data - Download data


Compared Gene Gene Pearson Correlation Value p-value B.-H. adjusted p-value
Smp_196000.1 SmLINC00554-IBu 0.86 2.92e-05 5.00e-04
Smp_196000.1 SmLINC00556-IBu 0.92 7.69e-07 4.26e-05
Smp_196000.1 SmLINC00787-IBu 0.82 1.00e-04 1.90e-03
Smp_196000.1 SmLINC01429-IBu 0.84 6.41e-05 1.00e-03
Smp_196000.1 SmLINC03116-IBu 0.81 2.00e-04 2.40e-03
Smp_196000.1 SmLINC05274-IBu 0.84 7.68e-05 1.10e-03
Smp_196000.1 SmLINC05840-IBu 0.81 2.00e-04 2.70e-03
Fig. S5 for with r ≥ 0.9 or r ≤ -0.9.

Expression Fold Change Data [log2(FC)] - Download data


Gene ID Cerc 3S 24S Male Female
Smp_176230.2 0 0.48 -0.91 -5.65 -11.30
Smp_196000.1 0 -0.33 -2.00 -8.40 -5.93

Pearson Correlation Coefficient Data - Download data


Compared Gene Gene Pearson Correlation Value p-value B.-H. adjusted p-value
Smp_176230.2 Smp_196000.1 0.91 1.70e-06 7.78e-05