Schistosoma mansoni lncRNAs Database


This site contains the web resource described in the paper "Atlas of Schistosoma mansoni long non-coding RNAs and their expression correlation to protein-coding genes" (2018) by Elton J. R. Vasconcelos, Vinícius C. Mesel, Lucas F. daSilva, David S. Pires, Guilherme M. Lavezzo, Adriana S. A. Pereira, Murilo S. Amaral and Sergio Verjovski-Almeida, Database, Volume 2018: bay068, https://doi.org/10.1093/database/bay068.

Based on data from Vasconcelos, EJR et al., The Schistosoma mansoni genome encodes thousands of long noncoding RNAs predicted to be functional at different parasite life-cycle stages. Scientific Reports 7: 10508, 2017.

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Smp_195180.1 Data

Correlation between Smp_195180.1 Protein Coding Gene and neighbor SmLINC (neighbor to up to two Smps upstream or two Smps downstream of the SmLINC in the genome) or SmLINCs with putative trans-acting mechanisms, with correlation coefficient r ≥ 0.5 or r ≤ -0.5 [ Click Here for Details ]

Fig. 7A S3 for with r ≥ 0.5 or r ≤ -0.5.

Expression Fold Change Data [log2(FC)] - Download data

Gene ID Cerc 3S 24S Male Female
SmLINC01637-IBu 0 0.25 -0.93 -6.06 -3.40
SmLINC04271-IBu 0 0.79 -0.67 -2.59 -4.22
Smp_195180.1 0 -1.44 1.42 7.81 8.29

Pearson Correlation Coefficient Data - Download data

Compared Gene Gene Pearson Correlation Value p-value B.-H. adjusted p-value
Smp_195180.1 SmLINC01637-IBu -0.73 1.60e-03 9.20e-03
Smp_195180.1 SmLINC04271-IBu -0.68 4.50e-03 1.94e-02

Correlation between Smp_195180.1 and robust SmLINCs (presenting four functional traits) across life cycle stages, with correlation coefficient r ≥ 0.8 or r ≤ -0.8 [ Click Here for Details ]

Fig. 6A for with r ≥ 0.8 or r ≤ -0.8.

Expression Fold Change Data [log2(FC)] - Download data

Gene ID Cerc 3S 24S Male Female
SmLINC00001-IBu 0 1.12 2.22 5.99 7.57
SmLINC00004-IBu 0 0.00 0.00 9.26 10.68
SmLINC00171-IBu 0 -0.59 -5.27 3.90 3.47
SmLINC00266-IBu 0 2.25 3.99 6.14 6.95
SmLINC00369-IBu 0 1.32 0.40 6.04 6.28
SmLINC00376-IBu 0 1.87 -0.39 3.34 3.93
SmLINC00525-IBu 0 -1.18 -2.31 1.77 2.53
SmLINC00548-IBu 0 1.58 1.11 7.48 7.20
SmLINC00633-IBu 0 1.89 0.00 7.59 7.46
SmLINC01084-IBu 0 -4.17 -2.32 2.88 3.57
SmLINC01122-IBu 0 0.00 0.00 6.36 6.32
SmLINC01431-IBu 0 4.28 4.33 10.35 10.82
SmLINC01432-IBu 0 0.44 1.90 4.35 4.98
SmLINC01433-IBu 0 5.33 4.84 12.27 11.18
SmLINC01435-IBu 0 -2.57 1.02 6.17 5.55
SmLINC01538-IBu 0 0.00 3.62 10.85 10.43
SmLINC01569-IBu 0 -0.90 -0.28 4.61 4.49
SmLINC02084-IBu 0 2.05 2.87 9.42 9.88
SmLINC02394-IBu 0 0.00 0.00 9.18 10.51
SmLINC02539-IBu 0 0.00 0.00 8.89 10.77
SmLINC02545-IBu 0 3.54 1.98 7.53 8.45
SmLINC02546-IBu 0 1.90 1.01 8.94 9.30
SmLINC03108-IBu 0 1.12 -0.64 3.64 3.93
SmLINC03309-IBu 0 -0.28 0.72 5.03 4.47
SmLINC03542-IBu 0 3.10 -2.22 9.17 7.75
SmLINC03693-IBu 0 0.04 0.11 4.65 4.21
SmLINC03849-IBu 0 -0.25 -0.95 -4.04 -4.58
SmLINC03927-IBu 0 0.00 3.30 7.68 8.27
SmLINC04421-IBu 0 -0.40 -1.98 2.75 3.71
SmLINC04478-IBu 0 -1.64 -5.06 4.33 4.42
SmLINC04521-IBu 0 0.00 2.57 11.17 11.06
SmLINC05147-IBu 0 -2.38 -0.94 2.89 2.87
SmLINC05258-IBu 0 0.71 -0.55 3.56 3.34
SmLINC05289-IBu 0 0.00 0.00 7.07 8.36
SmLINC05604-IBu 0 3.08 0.00 9.77 11.08
SmLINC06024-IBu 0 -2.97 -2.19 1.09 1.92
SmLINC06145-IBu 0 1.04 -4.71 4.38 4.76
SmLINC06221-IBu 0 2.16 3.44 6.39 5.80
SmLINC06490-IBu 0 -0.11 0.31 -3.82 -4.89
SmLINC06543-IBu 0 -0.52 0.39 3.89 3.37
Smp_195180.1 0 -1.44 1.42 7.81 8.29

Pearson Correlation Coefficient Data - Download data

Compared Gene Gene Pearson Correlation Value p-value B.-H. adjusted p-value
Smp_195180.1 SmLINC00001-IBu 0.82 1.00e-04 2.10e-03
Smp_195180.1 SmLINC00004-IBu 0.82 1.00e-04 1.80e-03
Smp_195180.1 SmLINC00171-IBu 0.80 3.00e-04 3.20e-03
Smp_195180.1 SmLINC00266-IBu 0.85 4.26e-05 7.00e-04
Smp_195180.1 SmLINC00369-IBu 0.94 1.83e-07 1.56e-05
Smp_195180.1 SmLINC00376-IBu 0.80 3.00e-04 3.30e-03
Smp_195180.1 SmLINC00525-IBu 0.90 4.83e-06 1.00e-04
Smp_195180.1 SmLINC00548-IBu 0.81 2.00e-04 2.40e-03
Smp_195180.1 SmLINC00633-IBu 0.89 5.03e-06 1.00e-04
Smp_195180.1 SmLINC01084-IBu 0.91 1.49e-06 6.82e-05
Smp_195180.1 SmLINC01122-IBu 0.89 5.03e-06 1.00e-04
Smp_195180.1 SmLINC01431-IBu 0.89 6.64e-06 1.00e-04
Smp_195180.1 SmLINC01432-IBu 0.91 1.27e-06 6.08e-05
Smp_195180.1 SmLINC01433-IBu 0.81 2.00e-04 2.30e-03
Smp_195180.1 SmLINC01435-IBu 0.89 7.62e-06 2.00e-04
Smp_195180.1 SmLINC01538-IBu 0.80 2.00e-04 2.70e-03
Smp_195180.1 SmLINC01569-IBu 0.89 6.42e-06 1.00e-04
Smp_195180.1 SmLINC02084-IBu 0.93 4.52e-07 2.93e-05
Smp_195180.1 SmLINC02394-IBu 0.83 1.00e-04 1.40e-03
Smp_195180.1 SmLINC02539-IBu 0.81 1.00e-04 2.20e-03
Smp_195180.1 SmLINC02545-IBu 0.83 1.00e-04 1.40e-03
Smp_195180.1 SmLINC02546-IBu 0.81 2.00e-04 2.50e-03
Smp_195180.1 SmLINC03108-IBu 0.87 2.29e-05 4.00e-04
Smp_195180.1 SmLINC03309-IBu 0.81 2.00e-04 2.30e-03
Smp_195180.1 SmLINC03542-IBu 0.82 1.00e-04 1.80e-03
Smp_195180.1 SmLINC03693-IBu 0.85 4.45e-05 7.00e-04
Smp_195180.1 SmLINC03849-IBu -0.80 2.00e-04 2.80e-03
Smp_195180.1 SmLINC03927-IBu 0.91 1.53e-06 6.94e-05
Smp_195180.1 SmLINC04421-IBu 0.94 7.51e-08 8.43e-06
Smp_195180.1 SmLINC04478-IBu 0.88 1.35e-05 3.00e-04
Smp_195180.1 SmLINC04521-IBu 0.90 4.35e-06 1.00e-04
Smp_195180.1 SmLINC05147-IBu 0.87 1.96e-05 4.00e-04
Smp_195180.1 SmLINC05258-IBu 0.83 1.00e-04 1.60e-03
Smp_195180.1 SmLINC05289-IBu 0.90 2.93e-06 1.00e-04
Smp_195180.1 SmLINC05604-IBu 0.90 2.96e-06 1.00e-04
Smp_195180.1 SmLINC06024-IBu 0.87 2.36e-05 4.00e-04
Smp_195180.1 SmLINC06145-IBu 0.88 1.27e-05 3.00e-04
Smp_195180.1 SmLINC06221-IBu 0.83 1.00e-04 1.50e-03
Smp_195180.1 SmLINC06490-IBu -0.80 2.00e-04 2.90e-03
Smp_195180.1 SmLINC06543-IBu 0.88 1.14e-05 2.00e-04

Correlation between Smp_195180.1 and highly differentially expressed Smps (log2 FC ≥ 10 in at least one developmental stage) and/or SmLINCs, with correlation coefficient r ≥ 0.9 or r ≤ -0.9 [ Click Here for Details ]

Fig. S5 for with r ≥ 0.9 or r ≤ -0.9.

Expression Fold Change Data [log2(FC)] - Download data

Gene ID Cerc 3S 24S Male Female
Smp_033260.1 0 0.00 0.00 11.56 12.33
Smp_056460.1 0 0.00 0.00 11.24 12.03
Smp_058660.1 0 1.16 3.97 10.53 10.53
Smp_079420.1 0 6.65 2.37 11.69 12.23
Smp_123550.1 0 2.43 2.16 11.52 11.47
Smp_145400.1 0 4.59 7.69 11.32 11.39
Smp_151120.1 0 2.34 3.50 10.04 9.86
Smp_156930.1 0 0.00 0.00 11.62 12.40
Smp_166860.1 0 0.00 0.00 10.18 10.19
Smp_172960.1 0 3.27 6.54 14.72 15.13
Smp_194860.1 0 3.09 7.72 14.07 14.58
Smp_195180.1 0 -1.44 1.42 7.81 8.29
Smp_203090.1 0 0.00 0.00 10.35 10.67

Pearson Correlation Coefficient Data - Download data

Compared Gene Gene Pearson Correlation Value p-value B.-H. adjusted p-value
Smp_033260.1 Smp_195180.1 0.92 7.16e-07 4.22e-05
Smp_056460.1 Smp_195180.1 0.94 8.01e-08 9.30e-06
Smp_058660.1 Smp_195180.1 0.90 4.16e-06 1.00e-04
Smp_195180.1 Smp_079420.1 0.91 2.07e-06 8.92e-05
Smp_195180.1 Smp_123550.1 0.96 4.59e-09 1.36e-06
Smp_195180.1 Smp_145400.1 0.92 1.01e-06 5.38e-05
Smp_151120.1 Smp_195180.1 0.94 9.97e-08 1.08e-05
Smp_156930.1 Smp_195180.1 0.94 1.09e-07 1.14e-05
Smp_166860.1 Smp_195180.1 0.95 5.81e-08 7.47e-06
Smp_195180.1 Smp_172960.1 0.95 3.84e-08 5.65e-06
Smp_194860.1 Smp_195180.1 0.96 1.34e-08 2.78e-06
Smp_203090.1 Smp_195180.1 0.93 2.72e-07 2.15e-05