Schistosoma mansoni lncRNAs Database


This site contains the web resource described in the paper "Atlas of Schistosoma mansoni long non-coding RNAs and their expression correlation to protein-coding genes" (2018) by Elton J. R. Vasconcelos, Vinícius C. Mesel, Lucas F. daSilva, David S. Pires, Guilherme M. Lavezzo, Adriana S. A. Pereira, Murilo S. Amaral and Sergio Verjovski-Almeida, Database, Volume 2018: bay068, https://doi.org/10.1093/database/bay068.

Based on data from Vasconcelos, EJR et al., The Schistosoma mansoni genome encodes thousands of long noncoding RNAs predicted to be functional at different parasite life-cycle stages. Scientific Reports 7: 10508, 2017.

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Smp_195160.1 Data

Correlation between Smp_195160.1 Protein Coding Gene and neighbor SmLINC (neighbor to up to two Smps upstream or two Smps downstream of the SmLINC in the genome) or SmLINCs with putative trans-acting mechanisms, with correlation coefficient r ≥ 0.5 or r ≤ -0.5 [ Click Here for Details ]

Fig. 7A S3 for with r ≥ 0.5 or r ≤ -0.5.

Expression Fold Change Data [log2(FC)] - Download data

Pearson Correlation Coefficient Data - Download data

Correlation between Smp_195160.1 and robust SmLINCs (presenting four functional traits) across life cycle stages, with correlation coefficient r ≥ 0.8 or r ≤ -0.8 [ Click Here for Details ]

Fig. 6A for with r ≥ 0.8 or r ≤ -0.8.

Expression Fold Change Data [log2(FC)] - Download data

Gene ID Cerc 3S 24S Male Female
SmLINC02255-IBu 0 -0.86 -1.80 -3.72 -4.71
SmLINC02630-IBu 0 -0.86 -1.66 -4.03 -11.09
SmLINC02657-IBu 0 -0.90 -1.95 -11.76 -11.76
SmLINC02678-IBu 0 -3.18 -2.40 -3.22 -5.56
SmLINC02888-IBu 0 -1.98 -4.28 -4.50 -5.76
SmLINC03769-IBu 0 -1.05 -2.94 -6.89 -9.10
SmLINC04957-IBu 0 -2.62 -5.90 -3.92 -7.44
SmLINC05989-IBu 0 -1.59 -3.64 -6.05 -6.59
SmLINC06128-IBu 0 -1.91 -4.82 -10.42 -10.44
SmLINC06535-IBu 0 -0.47 -1.74 -4.21 -5.43
SmLINC06890-IBu 0 -2.18 -6.70 -7.95 -9.08
SmLINC06903-IBu 0 -1.36 -4.25 -5.91 -3.41
Smp_195160.1 0 -1.78 -3.62 -7.03 -7.47

Pearson Correlation Coefficient Data - Download data

Compared Gene Gene Pearson Correlation Value p-value B.-H. adjusted p-value
Smp_195160.1 SmLINC02255-IBu 0.88 9.92e-06 2.00e-04
Smp_195160.1 SmLINC02630-IBu 0.83 9.23e-05 1.30e-03
Smp_195160.1 SmLINC02657-IBu 0.87 2.23e-05 4.00e-04
Smp_195160.1 SmLINC02678-IBu 0.81 2.00e-04 2.40e-03
Smp_195160.1 SmLINC02888-IBu 0.83 1.00e-04 1.40e-03
Smp_195160.1 SmLINC03769-IBu 0.84 8.72e-05 1.20e-03
Smp_195160.1 SmLINC04957-IBu 0.85 4.03e-05 7.00e-04
Smp_195160.1 SmLINC05989-IBu 0.93 4.98e-07 3.14e-05
Smp_195160.1 SmLINC06128-IBu 0.97 1.17e-09 5.23e-07
Smp_195160.1 SmLINC06535-IBu 0.80 2.00e-04 3.00e-03
Smp_195160.1 SmLINC06890-IBu 0.82 1.00e-04 2.10e-03
Smp_195160.1 SmLINC06903-IBu 0.90 3.15e-06 1.00e-04

Correlation between Smp_195160.1 and highly differentially expressed Smps (log2 FC ≥ 10 in at least one developmental stage) and/or SmLINCs, with correlation coefficient r ≥ 0.9 or r ≤ -0.9 [ Click Here for Details ]

Fig. S5 for with r ≥ 0.9 or r ≤ -0.9.

Expression Fold Change Data [log2(FC)] - Download data

Gene ID Cerc 3S 24S Male Female
Smp_018880.1 0 -2.71 -8.49 -10.03 -6.16
Smp_034940.3 0 -1.53 -6.25 -9.66 -13.38
Smp_035090.2 0 -1.41 -2.69 -14.78 -14.86
Smp_051230.4 0 -1.10 -5.26 -12.47 -12.47
Smp_071380.2 0 -3.62 -7.62 -10.38 -10.26
Smp_102670.1 0 -2.95 -8.79 -12.62 -12.62
Smp_106390.1 0 -2.35 -4.90 -10.78 -6.23
Smp_109240.1 0 -1.29 -3.52 -6.30 -10.11
Smp_134410.1 0 -2.22 -3.88 -6.81 -12.78
Smp_145810.2 0 -1.83 -3.47 -4.75 -10.08
Smp_149670.1 0 -1.98 -3.69 -10.45 -9.35
Smp_152780.1 0 -4.06 -8.92 -8.72 -11.55
Smp_169190.1 0 -3.08 -5.99 -19.20 -16.89
Smp_185360.1 0 -2.43 -5.85 -12.83 -12.83
Smp_188900.1 0 -1.35 -4.02 -11.76 -11.76
Smp_195070.1 0 -1.13 -9.73 -18.26 -16.31
Smp_195160.1 0 -1.78 -3.62 -7.03 -7.47
Smp_206200.1 0 -1.74 -3.03 -14.12 -16.70

Pearson Correlation Coefficient Data - Download data

Compared Gene Gene Pearson Correlation Value p-value B.-H. adjusted p-value
Smp_018880.1 Smp_195160.1 0.96 7.92e-09 1.95e-06
Smp_034940.3 Smp_195160.1 0.95 2.16e-08 3.82e-06
Smp_195160.1 Smp_035090.2 0.96 1.26e-08 2.67e-06
Smp_195160.1 Smp_051230.4 0.91 1.92e-06 8.46e-05
Smp_195160.1 Smp_071380.2 0.91 1.21e-06 6.11e-05
Smp_102670.1 Smp_195160.1 0.93 3.07e-07 2.34e-05
Smp_106390.1 Smp_195160.1 0.92 9.58e-07 5.17e-05
Smp_109240.1 Smp_195160.1 0.93 4.22e-07 2.92e-05
Smp_134410.1 Smp_195160.1 0.98 4.11e-12 1.59e-08
Smp_145810.2 Smp_195160.1 0.92 9.27e-07 5.05e-05
Smp_149670.1 Smp_195160.1 0.97 1.03e-09 5.22e-07
Smp_152780.1 Smp_195160.1 0.90 4.35e-06 1.00e-04
Smp_169190.1 Smp_195160.1 0.93 4.50e-07 3.05e-05
Smp_185360.1 Smp_195160.1 0.90 3.60e-06 1.00e-04
Smp_188900.1 Smp_195160.1 0.90 3.95e-06 1.00e-04
Smp_195160.1 Smp_195070.1 0.92 9.01e-07 4.96e-05
Smp_206200.1 Smp_195160.1 0.90 3.39e-06 1.00e-04