Schistosoma mansoni lncRNAs Database



This site contains the web resource described in the paper "Atlas of Schistosoma mansoni long non-coding RNAs and their expression correlation to protein-coding genes" (2018) by Elton J. R. Vasconcelos, Vinícius C. Mesel, Lucas F. daSilva, David S. Pires, Guilherme M. Lavezzo, Adriana S. A. Pereira, Murilo S. Amaral and Sergio Verjovski-Almeida, Database, Volume 2018: bay068, https://doi.org/10.1093/database/bay068.


Based on data from Vasconcelos, EJR et al., The Schistosoma mansoni genome encodes thousands of long noncoding RNAs predicted to be functional at different parasite life-cycle stages. Scientific Reports 7: 10508, 2017.


Smp_195150.1 Data


Fig. 6A for with r ≥ 0.8 or r ≤ -0.8.

Expression Fold Change Data [log2(FC)] - Download data


Gene ID Cerc 3S 24S Male Female
SmLINC00037-IBu 0 0.38 -1.52 -5.66 -6.88
SmLINC00133-IBu 0 0.41 -1.72 -5.79 -6.76
SmLINC00282-IBu 0 0.07 -1.80 -4.82 -4.14
SmLINC00294-IBu 0 0.33 -0.47 -2.74 -4.74
SmLINC00525-IBu 0 -1.18 -2.31 1.77 2.53
SmLINC00556-IBu 0 -0.74 -2.79 -5.06 -5.28
SmLINC01084-IBu 0 -4.17 -2.32 2.88 3.57
SmLINC01431-IBu 0 4.28 4.33 10.35 10.82
SmLINC01486-IBu 0 0.59 -1.26 -4.75 -5.22
SmLINC01637-IBu 0 0.25 -0.93 -6.06 -3.40
SmLINC02255-IBu 0 -0.86 -1.80 -3.72 -4.71
SmLINC02630-IBu 0 -0.86 -1.66 -4.03 -11.09
SmLINC02657-IBu 0 -0.90 -1.95 -11.76 -11.76
SmLINC03848-IBu 0 -0.05 -2.68 -3.98 -4.70
SmLINC03849-IBu 0 -0.25 -0.95 -4.04 -4.58
SmLINC03930-IBu 0 -0.18 -2.11 -8.92 -4.64
SmLINC04421-IBu 0 -0.40 -1.98 2.75 3.71
SmLINC05284-IBu 0 -0.31 -1.54 -3.79 -5.97
SmLINC05716-IBu 0 0.29 -1.48 -4.28 -5.77
SmLINC05720-IBu 0 0.01 -1.80 -4.98 -8.04
SmLINC06535-IBu 0 -0.47 -1.74 -4.21 -5.43
Smp_195150.1 0 -0.70 -1.90 -6.54 -7.80

Pearson Correlation Coefficient Data - Download data


Compared Gene Gene Pearson Correlation Value p-value B.-H. adjusted p-value
Smp_195150.1 SmLINC00037-IBu 0.83 1.00e-04 1.40e-03
Smp_195150.1 SmLINC00133-IBu 0.82 1.00e-04 1.70e-03
Smp_195150.1 SmLINC00282-IBu 0.85 4.57e-05 8.00e-04
Smp_195150.1 SmLINC00294-IBu 0.81 2.00e-04 2.60e-03
Smp_195150.1 SmLINC00525-IBu -0.80 2.00e-04 3.10e-03
Smp_195150.1 SmLINC00556-IBu 0.82 1.00e-04 1.80e-03
Smp_195150.1 SmLINC01084-IBu -0.84 8.45e-05 1.20e-03
Smp_195150.1 SmLINC01431-IBu -0.80 2.00e-04 2.90e-03
Smp_195150.1 SmLINC01486-IBu 0.82 1.00e-04 1.90e-03
Smp_195150.1 SmLINC01637-IBu 0.84 6.34e-05 1.00e-03
Smp_195150.1 SmLINC02255-IBu 0.91 1.29e-06 6.17e-05
Smp_195150.1 SmLINC02630-IBu 0.94 1.56e-07 1.40e-05
Smp_195150.1 SmLINC02657-IBu 0.85 4.66e-05 8.00e-04
Smp_195150.1 SmLINC03848-IBu 0.80 3.00e-04 3.30e-03
Smp_195150.1 SmLINC03849-IBu 0.87 2.32e-05 4.00e-04
Smp_195150.1 SmLINC03930-IBu 0.86 3.35e-05 6.00e-04
Smp_195150.1 SmLINC04421-IBu -0.81 2.00e-04 2.40e-03
Smp_195150.1 SmLINC05284-IBu 0.88 1.07e-05 2.00e-04
Smp_195150.1 SmLINC05716-IBu 0.83 1.00e-04 1.60e-03
Smp_195150.1 SmLINC05720-IBu 0.89 5.21e-06 1.00e-04
Smp_195150.1 SmLINC06535-IBu 0.94 7.03e-08 8.05e-06
Fig. S5 for with r ≥ 0.9 or r ≤ -0.9.

Expression Fold Change Data [log2(FC)] - Download data


Gene ID Cerc 3S 24S Male Female
Smp_036270.4 0 -0.36 -2.80 -8.87 -13.92
Smp_055340.2 0 8.73 10.47 12.13 12.52
Smp_077690.1 0 -0.88 -2.98 -12.11 -12.11
Smp_160230.1 0 -0.76 -3.24 -8.69 -10.72
Smp_188900.1 0 -1.35 -4.02 -11.76 -11.76
Smp_195150.1 0 -0.70 -1.90 -6.54 -7.80
Smp_202140.1 0 -1.27 -3.64 -10.44 -10.44

Pearson Correlation Coefficient Data - Download data


Compared Gene Gene Pearson Correlation Value p-value B.-H. adjusted p-value
Smp_195150.1 Smp_036270.4 0.90 3.59e-06 1.00e-04
Smp_195150.1 Smp_055340.2 -0.91 2.36e-06 9.79e-05
Smp_195150.1 Smp_077690.1 0.92 9.76e-07 5.24e-05
Smp_195150.1 Smp_160230.1 0.94 1.14e-07 1.18e-05
Smp_195150.1 Smp_188900.1 0.90 2.71e-06 1.00e-04
Smp_195150.1 Smp_202140.1 0.91 2.47e-06 1.00e-04