Schistosoma mansoni lncRNAs Database



This site contains the web resource described in the paper "Atlas of Schistosoma mansoni long non-coding RNAs and their expression correlation to protein-coding genes" (2018) by Elton J. R. Vasconcelos, Vinícius C. Mesel, Lucas F. daSilva, David S. Pires, Guilherme M. Lavezzo, Adriana S. A. Pereira, Murilo S. Amaral and Sergio Verjovski-Almeida, Database, Volume 2018: bay068, https://doi.org/10.1093/database/bay068.


Based on data from Vasconcelos, EJR et al., The Schistosoma mansoni genome encodes thousands of long noncoding RNAs predicted to be functional at different parasite life-cycle stages. Scientific Reports 7: 10508, 2017.


Smp_195110.1 Data


Fig. 6A for with r ≥ 0.8 or r ≤ -0.8.

Expression Fold Change Data [log2(FC)] - Download data


Gene ID Cerc 3S 24S Male Female
SmLINC00037-IBu 0 0.38 -1.52 -5.66 -6.88
SmLINC00133-IBu 0 0.41 -1.72 -5.79 -6.76
SmLINC00282-IBu 0 0.07 -1.80 -4.82 -4.14
SmLINC00294-IBu 0 0.33 -0.47 -2.74 -4.74
SmLINC00376-IBu 0 1.87 -0.39 3.34 3.93
SmLINC00525-IBu 0 -1.18 -2.31 1.77 2.53
SmLINC01084-IBu 0 -4.17 -2.32 2.88 3.57
SmLINC01486-IBu 0 0.59 -1.26 -4.75 -5.22
SmLINC01637-IBu 0 0.25 -0.93 -6.06 -3.40
SmLINC02255-IBu 0 -0.86 -1.80 -3.72 -4.71
SmLINC02630-IBu 0 -0.86 -1.66 -4.03 -11.09
SmLINC02657-IBu 0 -0.90 -1.95 -11.76 -11.76
SmLINC03849-IBu 0 -0.25 -0.95 -4.04 -4.58
SmLINC03930-IBu 0 -0.18 -2.11 -8.92 -4.64
SmLINC04421-IBu 0 -0.40 -1.98 2.75 3.71
SmLINC05284-IBu 0 -0.31 -1.54 -3.79 -5.97
SmLINC05716-IBu 0 0.29 -1.48 -4.28 -5.77
SmLINC05720-IBu 0 0.01 -1.80 -4.98 -8.04
SmLINC06535-IBu 0 -0.47 -1.74 -4.21 -5.43
SmLINC06892-IBu 0 -2.10 -3.44 -12.52 -12.52
Smp_195110.1 0 -0.78 -1.68 -8.24 -8.43

Pearson Correlation Coefficient Data - Download data


Compared Gene Gene Pearson Correlation Value p-value B.-H. adjusted p-value
Smp_195110.1 SmLINC00037-IBu 0.81 2.00e-04 2.50e-03
Smp_195110.1 SmLINC00133-IBu 0.80 2.00e-04 2.80e-03
Smp_195110.1 SmLINC00282-IBu 0.83 1.00e-04 1.40e-03
Smp_195110.1 SmLINC00294-IBu 0.80 2.00e-04 3.00e-03
Smp_195110.1 SmLINC00376-IBu -0.83 1.00e-04 1.60e-03
Smp_195110.1 SmLINC00525-IBu -0.80 3.00e-04 3.30e-03
Smp_195110.1 SmLINC01084-IBu -0.83 1.00e-04 1.60e-03
Smp_195110.1 SmLINC01486-IBu 0.81 1.00e-04 2.20e-03
Smp_195110.1 SmLINC01637-IBu 0.83 1.00e-04 1.50e-03
Smp_195110.1 SmLINC02255-IBu 0.90 4.86e-06 1.00e-04
Smp_195110.1 SmLINC02630-IBu 0.92 8.37e-07 4.52e-05
Smp_195110.1 SmLINC02657-IBu 0.83 1.00e-04 1.40e-03
Smp_195110.1 SmLINC03849-IBu 0.84 8.67e-05 1.20e-03
Smp_195110.1 SmLINC03930-IBu 0.85 4.56e-05 7.00e-04
Smp_195110.1 SmLINC04421-IBu -0.80 3.00e-04 3.20e-03
Smp_195110.1 SmLINC05284-IBu 0.85 4.04e-05 7.00e-04
Smp_195110.1 SmLINC05716-IBu 0.80 2.00e-04 2.90e-03
Smp_195110.1 SmLINC05720-IBu 0.85 5.48e-05 9.00e-04
Smp_195110.1 SmLINC06535-IBu 0.96 1.16e-08 2.36e-06
Smp_195110.1 SmLINC06892-IBu 0.80 2.00e-04 3.10e-03
Fig. S5 for with r ≥ 0.9 or r ≤ -0.9.

Expression Fold Change Data [log2(FC)] - Download data


Gene ID Cerc 3S 24S Male Female
Smp_160230.1 0 -0.76 -3.24 -8.69 -10.72
Smp_188900.1 0 -1.35 -4.02 -11.76 -11.76
Smp_195110.1 0 -0.78 -1.68 -8.24 -8.43

Pearson Correlation Coefficient Data - Download data


Compared Gene Gene Pearson Correlation Value p-value B.-H. adjusted p-value
Smp_195110.1 Smp_160230.1 0.93 2.02e-07 1.75e-05
Smp_188900.1 Smp_195110.1 0.91 2.01e-06 8.73e-05