Schistosoma mansoni lncRNAs Database



This site contains the web resource described in the paper "Atlas of Schistosoma mansoni long non-coding RNAs and their expression correlation to protein-coding genes" (2018) by Elton J. R. Vasconcelos, Vinícius C. Mesel, Lucas F. daSilva, David S. Pires, Guilherme M. Lavezzo, Adriana S. A. Pereira, Murilo S. Amaral and Sergio Verjovski-Almeida, Database, Volume 2018: bay068, https://doi.org/10.1093/database/bay068.


Based on data from Vasconcelos, EJR et al., The Schistosoma mansoni genome encodes thousands of long noncoding RNAs predicted to be functional at different parasite life-cycle stages. Scientific Reports 7: 10508, 2017.


Smp_195060.1 Data


Fig. 6A for with r ≥ 0.8 or r ≤ -0.8.

Expression Fold Change Data [log2(FC)] - Download data


Gene ID Cerc 3S 24S Male Female
SmLINC00133-IBu 0 0.41 -1.72 -5.79 -6.76
SmLINC00282-IBu 0 0.07 -1.80 -4.82 -4.14
SmLINC01486-IBu 0 0.59 -1.26 -4.75 -5.22
SmLINC03848-IBu 0 -0.05 -2.68 -3.98 -4.70
SmLINC03930-IBu 0 -0.18 -2.11 -8.92 -4.64
SmLINC06535-IBu 0 -0.47 -1.74 -4.21 -5.43
Smp_195060.1 0 -0.69 -4.00 -2.76 -3.57

Pearson Correlation Coefficient Data - Download data


Compared Gene Gene Pearson Correlation Value p-value B.-H. adjusted p-value
Smp_195060.1 SmLINC00133-IBu 0.83 1.00e-04 1.40e-03
Smp_195060.1 SmLINC00282-IBu 0.83 9.73e-05 1.30e-03
Smp_195060.1 SmLINC01486-IBu 0.80 2.00e-04 2.80e-03
Smp_195060.1 SmLINC03848-IBu 0.86 2.81e-05 5.00e-04
Smp_195060.1 SmLINC03930-IBu 0.85 5.09e-05 8.00e-04
Smp_195060.1 SmLINC06535-IBu 0.89 6.87e-06 2.00e-04
Fig. S5 for with r ≥ 0.9 or r ≤ -0.9.

Expression Fold Change Data [log2(FC)] - Download data


Gene ID Cerc 3S 24S Male Female
Smp_032970.1 0 -0.24 -2.98 -11.57 -7.79
Smp_051230.4 0 -1.10 -5.26 -12.47 -12.47
Smp_067980.1 0 -0.94 -11.67 -4.00 -4.18
Smp_083180.1 0 -1.30 -10.31 -10.31 -10.31
Smp_168080.2 0 -1.01 -12.06 -12.06 -12.06
Smp_182090.1 0 0.34 -10.52 -4.07 -5.68
Smp_188900.1 0 -1.35 -4.02 -11.76 -11.76
Smp_195060.1 0 -0.69 -4.00 -2.76 -3.57
Smp_195070.1 0 -1.13 -9.73 -18.26 -16.31

Pearson Correlation Coefficient Data - Download data


Compared Gene Gene Pearson Correlation Value p-value B.-H. adjusted p-value
Smp_195060.1 Smp_032970.1 0.95 2.99e-08 4.76e-06
Smp_195060.1 Smp_051230.4 0.92 7.81e-07 4.48e-05
Smp_195060.1 Smp_067980.1 0.93 2.21e-07 1.86e-05
Smp_195060.1 Smp_083180.1 0.94 1.92e-07 1.69e-05
Smp_195060.1 Smp_168080.2 0.96 2.36e-09 8.88e-07
Smp_195060.1 Smp_182090.1 0.93 3.10e-07 2.36e-05
Smp_195060.1 Smp_188900.1 0.91 2.03e-06 8.81e-05
Smp_195060.1 Smp_195070.1 0.95 3.44e-08 5.24e-06