Schistosoma mansoni lncRNAs Database



This site contains the web resource described in the paper "Atlas of Schistosoma mansoni long non-coding RNAs and their expression correlation to protein-coding genes" (2018) by Elton J. R. Vasconcelos, Vinícius C. Mesel, Lucas F. daSilva, David S. Pires, Guilherme M. Lavezzo, Adriana S. A. Pereira, Murilo S. Amaral and Sergio Verjovski-Almeida, Database, Volume 2018: bay068, https://doi.org/10.1093/database/bay068.


Based on data from Vasconcelos, EJR et al., The Schistosoma mansoni genome encodes thousands of long noncoding RNAs predicted to be functional at different parasite life-cycle stages. Scientific Reports 7: 10508, 2017.


Smp_194750.1 Data


Fig. 6A for with r ≥ 0.8 or r ≤ -0.8.

Expression Fold Change Data [log2(FC)] - Download data


Gene ID Cerc 3S 24S Male Female
SmLINC01431-IBu 0 4.28 4.33 10.35 10.82
SmLINC01538-IBu 0 0.00 3.62 10.85 10.43
SmLINC01733-IBu 0 0.89 2.09 5.78 5.68
SmLINC04423-IBu 0 -0.15 -1.31 2.28 3.30
SmLINC04521-IBu 0 0.00 2.57 11.17 11.06
SmLINC06024-IBu 0 -2.97 -2.19 1.09 1.92
SmLINC06205-IBu 0 0.00 7.73 9.47 9.16
SmLINC06449-IBu 0 2.33 4.31 7.30 6.63
Smp_194750.1 0 -2.65 -2.65 4.98 5.54

Pearson Correlation Coefficient Data - Download data


Compared Gene Gene Pearson Correlation Value p-value B.-H. adjusted p-value
Smp_194750.1 SmLINC01431-IBu 0.83 9.11e-05 1.30e-03
Smp_194750.1 SmLINC01538-IBu 0.82 1.00e-04 2.00e-03
Smp_194750.1 SmLINC01733-IBu 0.90 4.00e-06 1.00e-04
Smp_194750.1 SmLINC04423-IBu 0.83 1.00e-04 1.40e-03
Smp_194750.1 SmLINC04521-IBu 0.82 1.00e-04 2.00e-03
Smp_194750.1 SmLINC06024-IBu 0.81 2.00e-04 2.60e-03
Smp_194750.1 SmLINC06205-IBu 0.80 2.00e-04 3.00e-03
Smp_194750.1 SmLINC06449-IBu 0.81 1.00e-04 2.20e-03
Fig. S5 for with r ≥ 0.9 or r ≤ -0.9.

Expression Fold Change Data [log2(FC)] - Download data


Gene ID Cerc 3S 24S Male Female
Smp_024180.1 0 3.08 4.23 10.66 11.72
Smp_024180.2 0 -0.35 -0.80 9.03 10.04
Smp_194750.1 0 -2.65 -2.65 4.98 5.54

Pearson Correlation Coefficient Data - Download data


Compared Gene Gene Pearson Correlation Value p-value B.-H. adjusted p-value
Smp_194750.1 Smp_024180.1 0.92 7.76e-07 4.46e-05
Smp_024180.2 Smp_194750.1 0.90 3.39e-06 1.00e-04