Schistosoma mansoni lncRNAs Database



This site contains the web resource described in the paper "Atlas of Schistosoma mansoni long non-coding RNAs and their expression correlation to protein-coding genes" (2018) by Elton J. R. Vasconcelos, Vinícius C. Mesel, Lucas F. daSilva, David S. Pires, Guilherme M. Lavezzo, Adriana S. A. Pereira, Murilo S. Amaral and Sergio Verjovski-Almeida, Database, Volume 2018: bay068, https://doi.org/10.1093/database/bay068.


Based on data from Vasconcelos, EJR et al., The Schistosoma mansoni genome encodes thousands of long noncoding RNAs predicted to be functional at different parasite life-cycle stages. Scientific Reports 7: 10508, 2017.


Smp_194670.1 Data


Fig. 6A for with r ≥ 0.8 or r ≤ -0.8.

Expression Fold Change Data [log2(FC)] - Download data


Gene ID Cerc 3S 24S Male Female
SmLINC00372-IBu 0 1.42 3.02 -1.83 -2.95
SmLINC01316-IBu 0 -0.35 0.57 -11.60 -4.95
SmLINC02646-IBu 0 0.70 0.79 -6.84 -2.55
SmLINC04074-IBu 0 7.29 6.66 0.00 0.00
SmLINC06646-IBu 0 1.59 1.70 -7.49 -7.49
SmLINC06836-IBu 0 5.91 8.23 0.00 0.00
Smp_194670.1 0 1.55 1.93 -1.67 -3.11

Pearson Correlation Coefficient Data - Download data


Compared Gene Gene Pearson Correlation Value p-value B.-H. adjusted p-value
Smp_194670.1 SmLINC00372-IBu 0.88 1.50e-05 3.00e-04
Smp_194670.1 SmLINC01316-IBu 0.91 2.17e-06 8.92e-05
Smp_194670.1 SmLINC02646-IBu 0.85 4.63e-05 8.00e-04
Smp_194670.1 SmLINC04074-IBu 0.85 4.68e-05 8.00e-04
Smp_194670.1 SmLINC06646-IBu 0.95 2.77e-08 4.26e-06
Smp_194670.1 SmLINC06836-IBu 0.82 1.00e-04 1.80e-03
Fig. S5 for with r ≥ 0.9 or r ≤ -0.9.

Expression Fold Change Data [log2(FC)] - Download data


Gene ID Cerc 3S 24S Male Female
Smp_017650.1 0 9.51 10.68 -7.98 0.00
Smp_021340.3 0 9.76 11.05 9.34 9.26
Smp_059340.3 0 0.76 1.23 -11.82 -11.82
Smp_059530.1 0 2.86 3.32 -11.10 -11.10
Smp_062070.1 0 9.47 10.97 6.18 8.79
Smp_083380.2 0 9.13 10.31 0.00 0.00
Smp_084940.2 0 10.34 11.98 9.66 9.92
Smp_098370.1 0 9.63 11.25 6.43 9.48
Smp_103540.1 0 11.43 12.63 8.84 9.65
Smp_194670.1 0 1.55 1.93 -1.67 -3.11

Pearson Correlation Coefficient Data - Download data


Compared Gene Gene Pearson Correlation Value p-value B.-H. adjusted p-value
Smp_194670.1 Smp_017650.1 0.94 1.05e-07 1.12e-05
Smp_194670.1 Smp_021340.3 0.91 1.37e-06 6.68e-05
Smp_194670.1 Smp_059340.3 0.97 8.01e-10 4.42e-07
Smp_194670.1 Smp_059530.1 0.96 3.09e-09 1.05e-06
Smp_194670.1 Smp_062070.1 0.90 4.16e-06 1.00e-04
Smp_194670.1 Smp_083380.2 0.95 5.62e-08 7.31e-06
Smp_194670.1 Smp_084940.2 0.93 4.64e-07 3.12e-05
Smp_194670.1 Smp_098370.1 0.90 4.14e-06 1.00e-04
Smp_194670.1 Smp_103540.1 0.93 3.12e-07 2.37e-05