Schistosoma mansoni lncRNAs Database



This site contains the web resource described in the paper "Atlas of Schistosoma mansoni long non-coding RNAs and their expression correlation to protein-coding genes" (2018) by Elton J. R. Vasconcelos, Vinícius C. Mesel, Lucas F. daSilva, David S. Pires, Guilherme M. Lavezzo, Adriana S. A. Pereira, Murilo S. Amaral and Sergio Verjovski-Almeida, Database, Volume 2018: bay068, https://doi.org/10.1093/database/bay068.


Based on data from Vasconcelos, EJR et al., The Schistosoma mansoni genome encodes thousands of long noncoding RNAs predicted to be functional at different parasite life-cycle stages. Scientific Reports 7: 10508, 2017.


Smp_194540.1 Data


Fig. 6A for with r ≥ 0.8 or r ≤ -0.8.

Expression Fold Change Data [log2(FC)] - Download data


Gene ID Cerc 3S 24S Male Female
SmLINC00369-IBu 0 1.32 0.40 6.04 6.28
SmLINC00477-IBu 0 -1.14 -0.46 4.37 3.06
SmLINC00484-IBu 0 -0.02 2.64 6.82 5.24
SmLINC00525-IBu 0 -1.18 -2.31 1.77 2.53
SmLINC00548-IBu 0 1.58 1.11 7.48 7.20
SmLINC00633-IBu 0 1.89 0.00 7.59 7.46
SmLINC00769-IBu 0 0.00 0.00 11.31 9.29
SmLINC01084-IBu 0 -4.17 -2.32 2.88 3.57
SmLINC01122-IBu 0 0.00 0.00 6.36 6.32
SmLINC01139-IBu 0 -1.59 -5.89 3.96 3.29
SmLINC01171-IBu 0 4.66 1.75 6.39 6.26
SmLINC01231-IBu 0 0.31 -3.75 7.29 6.55
SmLINC01431-IBu 0 4.28 4.33 10.35 10.82
SmLINC01435-IBu 0 -2.57 1.02 6.17 5.55
SmLINC01538-IBu 0 0.00 3.62 10.85 10.43
SmLINC01569-IBu 0 -0.90 -0.28 4.61 4.49
SmLINC01733-IBu 0 0.89 2.09 5.78 5.68
SmLINC01746-IBu 0 -3.80 -0.66 2.43 2.13
SmLINC02084-IBu 0 2.05 2.87 9.42 9.88
SmLINC02545-IBu 0 3.54 1.98 7.53 8.45
SmLINC02546-IBu 0 1.90 1.01 8.94 9.30
SmLINC03309-IBu 0 -0.28 0.72 5.03 4.47
SmLINC03693-IBu 0 0.04 0.11 4.65 4.21
SmLINC03927-IBu 0 0.00 3.30 7.68 8.27
SmLINC04345-IBu 0 -0.21 -0.00 6.97 4.53
SmLINC04421-IBu 0 -0.40 -1.98 2.75 3.71
SmLINC04423-IBu 0 -0.15 -1.31 2.28 3.30
SmLINC04432-IBu 0 0.66 2.72 5.35 5.03
SmLINC04475-IBu 0 -0.34 2.17 4.09 3.42
SmLINC04478-IBu 0 -1.64 -5.06 4.33 4.42
SmLINC04521-IBu 0 0.00 2.57 11.17 11.06
SmLINC04637-IBu 0 5.61 0.00 9.87 8.40
SmLINC04663-IBu 0 -2.56 -3.27 2.68 1.54
SmLINC04684-IBu 0 0.48 -0.86 3.35 3.38
SmLINC05147-IBu 0 -2.38 -0.94 2.89 2.87
SmLINC05258-IBu 0 0.71 -0.55 3.56 3.34
SmLINC06010-IBu 0 1.91 2.45 5.62 4.62
SmLINC06024-IBu 0 -2.97 -2.19 1.09 1.92
SmLINC06221-IBu 0 2.16 3.44 6.39 5.80
SmLINC06415-IBu 0 0.00 5.09 7.86 8.72
SmLINC06444-IBu 0 -1.92 -0.19 3.94 3.05
SmLINC06449-IBu 0 2.33 4.31 7.30 6.63
SmLINC06536-IBu 0 -3.65 0.03 5.24 4.25
SmLINC06537-IBu 0 -3.92 -3.92 4.71 2.74
SmLINC06543-IBu 0 -0.52 0.39 3.89 3.37
Smp_194540.1 0 1.88 2.61 8.34 8.39

Pearson Correlation Coefficient Data - Download data


Compared Gene Gene Pearson Correlation Value p-value B.-H. adjusted p-value
Smp_194540.1 SmLINC00369-IBu 0.84 7.55e-05 1.10e-03
Smp_194540.1 SmLINC00477-IBu 0.80 3.00e-04 3.20e-03
Smp_194540.1 SmLINC00484-IBu 0.82 1.00e-04 1.90e-03
Smp_194540.1 SmLINC00525-IBu 0.87 1.52e-05 3.00e-04
Smp_194540.1 SmLINC00548-IBu 0.93 2.01e-07 1.66e-05
Smp_194540.1 SmLINC00633-IBu 0.91 1.37e-06 6.43e-05
Smp_194540.1 SmLINC00769-IBu 0.85 4.05e-05 7.00e-04
Smp_194540.1 SmLINC01084-IBu 0.89 6.28e-06 1.00e-04
Smp_194540.1 SmLINC01122-IBu 0.94 1.02e-07 1.04e-05
Smp_194540.1 SmLINC01139-IBu 0.92 1.13e-06 5.62e-05
Smp_194540.1 SmLINC01171-IBu 0.88 1.31e-05 3.00e-04
Smp_194540.1 SmLINC01231-IBu 0.82 1.00e-04 1.70e-03
Smp_194540.1 SmLINC01431-IBu 0.90 2.72e-06 1.00e-04
Smp_194540.1 SmLINC01435-IBu 0.87 2.32e-05 4.00e-04
Smp_194540.1 SmLINC01538-IBu 0.95 5.83e-08 7.08e-06
Smp_194540.1 SmLINC01569-IBu 0.95 2.43e-08 3.90e-06
Smp_194540.1 SmLINC01733-IBu 0.93 2.49e-07 1.93e-05
Smp_194540.1 SmLINC01746-IBu 0.87 2.11e-05 4.00e-04
Smp_194540.1 SmLINC02084-IBu 0.82 1.00e-04 1.70e-03
Smp_194540.1 SmLINC02545-IBu 0.81 2.00e-04 2.60e-03
Smp_194540.1 SmLINC02546-IBu 0.87 1.77e-05 4.00e-04
Smp_194540.1 SmLINC03309-IBu 0.92 1.17e-06 5.75e-05
Smp_194540.1 SmLINC03693-IBu 0.84 6.77e-05 1.00e-03
Smp_194540.1 SmLINC03927-IBu 0.86 3.42e-05 6.00e-04
Smp_194540.1 SmLINC04345-IBu 0.84 8.84e-05 1.20e-03
Smp_194540.1 SmLINC04421-IBu 0.81 1.00e-04 2.20e-03
Smp_194540.1 SmLINC04423-IBu 0.86 3.59e-05 6.00e-04
Smp_194540.1 SmLINC04432-IBu 0.91 2.22e-06 9.04e-05
Smp_194540.1 SmLINC04475-IBu 0.83 9.88e-05 1.40e-03
Smp_194540.1 SmLINC04478-IBu 0.95 2.34e-08 3.79e-06
Smp_194540.1 SmLINC04521-IBu 0.90 4.85e-06 1.00e-04
Smp_194540.1 SmLINC04637-IBu 0.89 4.87e-06 1.00e-04
Smp_194540.1 SmLINC04663-IBu 0.87 1.55e-05 3.00e-04
Smp_194540.1 SmLINC04684-IBu 0.83 1.00e-04 1.60e-03
Smp_194540.1 SmLINC05147-IBu 0.86 2.99e-05 5.00e-04
Smp_194540.1 SmLINC05258-IBu 0.80 2.00e-04 2.90e-03
Smp_194540.1 SmLINC06010-IBu 0.90 3.62e-06 1.00e-04
Smp_194540.1 SmLINC06024-IBu 0.88 9.07e-06 2.00e-04
Smp_194540.1 SmLINC06221-IBu 0.82 1.00e-04 2.00e-03
Smp_194540.1 SmLINC06415-IBu 0.81 1.00e-04 2.20e-03
Smp_194540.1 SmLINC06444-IBu 0.93 3.20e-07 2.30e-05
Smp_194540.1 SmLINC06449-IBu 0.84 8.30e-05 1.20e-03
Smp_194540.1 SmLINC06536-IBu 0.80 3.00e-04 3.40e-03
Smp_194540.1 SmLINC06537-IBu 0.85 5.96e-05 9.00e-04
Smp_194540.1 SmLINC06543-IBu 0.83 1.00e-04 1.60e-03
Fig. S5 for with r ≥ 0.9 or r ≤ -0.9.

Expression Fold Change Data [log2(FC)] - Download data


Gene ID Cerc 3S 24S Male Female
Smp_031040.1 0 8.57 0.03 12.35 12.40
Smp_034980.2 0 8.75 0.00 11.30 11.03
Smp_040970.2 0 9.27 9.42 14.46 14.83
Smp_056360.3 0 -9.92 -10.13 2.08 1.89
Smp_079420.1 0 6.65 2.37 11.69 12.23
Smp_094050.1 0 0.00 6.75 11.34 12.21
Smp_137000.2 0 7.58 1.98 11.35 11.89
Smp_145400.1 0 4.59 7.69 11.32 11.39
Smp_150980.2 0 7.91 9.49 12.91 12.48
Smp_172480.1 0 4.53 4.98 10.04 9.89
Smp_194540.1 0 1.88 2.61 8.34 8.39
Smp_203090.1 0 0.00 0.00 10.35 10.67
Smp_205270.1 0 0.71 -0.40 10.02 9.83

Pearson Correlation Coefficient Data - Download data


Compared Gene Gene Pearson Correlation Value p-value B.-H. adjusted p-value
Smp_031040.1 Smp_194540.1 0.94 8.11e-08 9.38e-06
Smp_034980.2 Smp_194540.1 0.95 3.66e-08 5.47e-06
Smp_194540.1 Smp_040970.2 0.94 9.12e-08 1.01e-05
Smp_056360.3 Smp_194540.1 0.91 1.96e-06 8.58e-05
Smp_194540.1 Smp_079420.1 0.91 2.51e-06 1.00e-04
Smp_094050.1 Smp_194540.1 0.90 2.75e-06 1.00e-04
Smp_194540.1 Smp_137000.2 0.90 2.66e-06 1.00e-04
Smp_194540.1 Smp_145400.1 0.90 4.32e-06 1.00e-04
Smp_150980.2 Smp_194540.1 0.93 2.34e-07 1.94e-05
Smp_172480.1 Smp_194540.1 0.92 7.28e-07 4.27e-05
Smp_203090.1 Smp_194540.1 0.92 5.74e-07 3.61e-05
Smp_194540.1 Smp_205270.1 0.90 3.36e-06 1.00e-04