Schistosoma mansoni lncRNAs Database



This site contains the web resource described in the paper "Atlas of Schistosoma mansoni long non-coding RNAs and their expression correlation to protein-coding genes" (2018) by Elton J. R. Vasconcelos, Vinícius C. Mesel, Lucas F. daSilva, David S. Pires, Guilherme M. Lavezzo, Adriana S. A. Pereira, Murilo S. Amaral and Sergio Verjovski-Almeida, Database, Volume 2018: bay068, https://doi.org/10.1093/database/bay068.


Based on data from Vasconcelos, EJR et al., The Schistosoma mansoni genome encodes thousands of long noncoding RNAs predicted to be functional at different parasite life-cycle stages. Scientific Reports 7: 10508, 2017.


Smp_194060.1 Data


Fig. 6A for with r ≥ 0.8 or r ≤ -0.8.

Expression Fold Change Data [log2(FC)] - Download data


Gene ID Cerc 3S 24S Male Female
SmLINC00372-IBu 0 1.42 3.02 -1.83 -2.95
SmLINC02026-IBu 0 -0.31 0.73 -7.72 -1.09
SmLINC04430-IBu 0 1.35 4.06 1.40 0.01
SmLINC05559-IBu 0 -0.72 2.59 -1.58 -1.98
SmLINC06490-IBu 0 -0.11 0.31 -3.82 -4.89
SmLINC06836-IBu 0 5.91 8.23 0.00 0.00
Smp_194060.1 0 0.19 1.68 -10.58 -10.66

Pearson Correlation Coefficient Data - Download data


Compared Gene Gene Pearson Correlation Value p-value B.-H. adjusted p-value
Smp_194060.1 SmLINC00372-IBu 0.85 4.25e-05 7.00e-04
Smp_194060.1 SmLINC02026-IBu 0.95 4.36e-08 5.81e-06
Smp_194060.1 SmLINC04430-IBu 0.89 5.47e-06 1.00e-04
Smp_194060.1 SmLINC05559-IBu 0.85 4.11e-05 7.00e-04
Smp_194060.1 SmLINC06490-IBu 0.91 2.18e-06 8.93e-05
Smp_194060.1 SmLINC06836-IBu 0.82 1.00e-04 1.90e-03
Fig. S5 for with r ≥ 0.9 or r ≤ -0.9.

Expression Fold Change Data [log2(FC)] - Download data


Gene ID Cerc 3S 24S Male Female
SmLINC00192-IBu 0 0.61 2.35 -8.28 -4.07
SmLINC01369-IBu 0 0.67 2.43 -5.36 -2.51
SmLINC02026-IBu 0 -0.31 0.73 -7.72 -1.09
SmLINC03924-IBu 0 0.69 2.22 -1.76 -2.59
SmLINC04003-IBu 0 -0.16 1.42 -3.63 -8.87
SmLINC04219-IBu 0 -1.93 4.04 -1.93 -1.93
SmLINC04259-IBu 0 0.67 0.50 -4.21 -5.86
SmLINC06183-IBu 0 1.58 3.42 -7.62 -7.62
SmLINC06334-IBu 0 -0.53 0.42 -4.61 -7.18
SmLINC06490-IBu 0 -0.11 0.31 -3.82 -4.89
SmLINC06494-IBu 0 -1.07 -1.19 -6.36 -6.05
SmLINC06839-IBu 0 -0.39 0.65 -6.55 -6.90
SmLINC07016-IBu 0 1.89 2.73 -4.50 -5.17
SmLINC07019-IBu 0 -0.56 -0.21 -4.43 -4.44
Smp_010140.2 0 7.72 10.83 -3.68 -3.68
Smp_017020.1 0 0.08 0.95 -6.58 -6.58
Smp_023140.1 0 -0.84 -0.87 -5.26 -4.87
Smp_035640.1 0 0.66 2.47 -3.45 -3.92
Smp_036470.1 0 -1.93 1.42 -1.69 -3.55
Smp_053830.1 0 -0.20 -1.48 -4.87 -3.36
Smp_069160.2 0 -0.02 1.03 -5.33 -4.92
Smp_075220.3 0 -0.21 1.05 -2.86 -3.43
Smp_090930.5 0 0.88 1.41 -11.45 -5.15
Smp_097800.3 0 0.13 0.54 -4.95 -4.74
Smp_098890.1 0 -0.06 -0.10 -10.16 -9.46
Smp_105420.2 0 0.72 -0.11 -12.04 -12.04
Smp_106750.1 0 0.07 1.73 -5.83 -8.52
Smp_112930.1 0 1.35 2.48 -6.71 -8.42
Smp_113620.3 0 -0.35 -0.97 -4.77 -3.55
Smp_120740.1 0 -0.36 1.05 -4.86 -4.75
Smp_127790.1 0 -0.50 1.35 -1.97 -4.33
Smp_131300.1 0 1.18 2.14 -4.87 -2.56
Smp_134100.1 0 0.70 4.69 0.40 -0.45
Smp_138080.1 0 4.97 10.75 -3.79 3.75
Smp_149220.1 0 0.14 0.72 -3.31 -3.61
Smp_152900.1 0 -0.24 0.96 -3.27 -3.63
Smp_158680.1 0 0.18 0.75 -3.19 -3.53
Smp_162850.1 0 -0.18 -0.96 -6.10 -7.13
Smp_166530.1 0 0.50 3.97 -5.99 -5.99
Smp_180050.1 0 1.06 0.86 -2.29 -5.29
Smp_189980.1 0 1.62 9.93 -1.10 -1.10
Smp_194060.1 0 0.19 1.68 -10.58 -10.66
Smp_200830.1 0 0.51 2.30 -3.02 -5.44
Smp_200840.1 0 0.23 -0.00 -8.20 -7.06
Smp_202420.1 0 -0.06 2.13 -4.70 -1.89
Smp_205050.1 0 0.07 1.73 -5.83 -8.52
Smp_205590.1 0 0.00 6.18 0.00 0.00

Pearson Correlation Coefficient Data - Download data


Compared Gene Gene Pearson Correlation Value p-value B.-H. adjusted p-value
Smp_194060.1 SmLINC00192-IBu 0.94 1.38e-07 1.34e-05
Smp_194060.1 SmLINC01369-IBu 0.93 4.13e-07 2.88e-05
Smp_194060.1 SmLINC02026-IBu 0.95 4.36e-08 6.15e-06
Smp_194060.1 SmLINC03924-IBu 0.93 4.48e-07 3.04e-05
Smp_194060.1 SmLINC04003-IBu 0.91 2.34e-06 9.73e-05
Smp_194060.1 SmLINC04219-IBu 0.90 2.73e-06 1.00e-04
Smp_194060.1 SmLINC04259-IBu 0.90 4.86e-06 1.00e-04
Smp_194060.1 SmLINC06183-IBu 0.96 1.05e-08 2.36e-06
Smp_194060.1 SmLINC06334-IBu 0.91 1.78e-06 8.03e-05
Smp_194060.1 SmLINC06490-IBu 0.91 2.18e-06 9.24e-05
Smp_194060.1 SmLINC06494-IBu 0.94 1.18e-07 1.21e-05
Smp_194060.1 SmLINC06839-IBu 0.93 2.84e-07 2.22e-05
Smp_194060.1 SmLINC07016-IBu 0.95 4.46e-08 6.25e-06
Smp_194060.1 SmLINC07019-IBu 0.95 3.19e-08 4.99e-06
Smp_010140.2 Smp_194060.1 0.92 9.00e-07 4.95e-05
Smp_194060.1 Smp_017020.1 0.93 3.71e-07 2.67e-05
Smp_194060.1 Smp_023140.1 0.92 1.05e-06 5.55e-05
Smp_194060.1 Smp_035640.1 0.96 2.31e-09 8.73e-07
Smp_194060.1 Smp_036470.1 0.90 3.32e-06 1.00e-04
Smp_194060.1 Smp_053830.1 0.91 2.25e-06 9.46e-05
Smp_194060.1 Smp_069160.2 0.95 3.68e-08 5.49e-06
Smp_075220.3 Smp_194060.1 0.98 1.78e-11 3.93e-08
Smp_090930.5 Smp_194060.1 0.91 1.24e-06 6.24e-05
Smp_194060.1 Smp_097800.3 0.94 7.67e-08 9.03e-06
Smp_098890.1 Smp_194060.1 0.97 4.82e-10 3.19e-07
Smp_194060.1 Smp_105420.2 0.91 2.13e-06 9.09e-05
Smp_106750.1 Smp_194060.1 0.95 4.60e-08 6.38e-06
Smp_194060.1 Smp_112930.1 0.93 3.28e-07 2.45e-05
Smp_194060.1 Smp_113620.3 0.91 1.61e-06 7.47e-05
Smp_120740.1 Smp_194060.1 0.91 2.18e-06 9.25e-05
Smp_127790.1 Smp_194060.1 0.90 3.54e-06 1.00e-04
Smp_131300.1 Smp_194060.1 0.91 1.79e-06 8.06e-05
Smp_134100.1 Smp_194060.1 0.90 2.97e-06 1.00e-04
Smp_138080.1 Smp_194060.1 0.90 2.75e-06 1.00e-04
Smp_194060.1 Smp_149220.1 0.91 1.29e-06 6.41e-05
Smp_194060.1 Smp_152900.1 0.92 6.40e-07 3.90e-05
Smp_194060.1 Smp_158680.1 0.91 2.02e-06 8.77e-05
Smp_194060.1 Smp_162850.1 0.90 2.54e-06 1.00e-04
Smp_166530.1 Smp_194060.1 0.90 3.60e-06 1.00e-04
Smp_194060.1 Smp_180050.1 0.92 8.49e-07 4.75e-05
Smp_194060.1 Smp_189980.1 0.90 3.29e-06 1.00e-04
Smp_200830.1 Smp_194060.1 0.93 4.43e-07 3.02e-05
Smp_200840.1 Smp_194060.1 0.97 2.51e-10 2.10e-07
Smp_194060.1 Smp_202420.1 0.92 1.14e-06 5.86e-05
Smp_205050.1 Smp_194060.1 0.95 4.60e-08 6.38e-06
Smp_205590.1 Smp_194060.1 0.90 3.53e-06 1.00e-04