Schistosoma mansoni lncRNAs Database



This site contains the web resource described in the paper "Atlas of Schistosoma mansoni long non-coding RNAs and their expression correlation to protein-coding genes" (2018) by Elton J. R. Vasconcelos, Vinícius C. Mesel, Lucas F. daSilva, David S. Pires, Guilherme M. Lavezzo, Adriana S. A. Pereira, Murilo S. Amaral and Sergio Verjovski-Almeida, Database, Volume 2018: bay068, https://doi.org/10.1093/database/bay068.


Based on data from Vasconcelos, EJR et al., The Schistosoma mansoni genome encodes thousands of long noncoding RNAs predicted to be functional at different parasite life-cycle stages. Scientific Reports 7: 10508, 2017.


Smp_194040.1 Data


Fig. 7A S3 for with r ≥ 0.5 or r ≤ -0.5.

Expression Fold Change Data [log2(FC)] - Download data


Gene ID Cerc 3S 24S Male Female
SmLINC05720-IBu 0 0.01 -1.80 -4.98 -8.04
Smp_194040.1 0 -2.17 -6.63 -5.72 -6.95

Pearson Correlation Coefficient Data - Download data


Compared Gene Gene Pearson Correlation Value p-value B.-H. adjusted p-value
Smp_194040.1 SmLINC05720-IBu 0.55 3.36e-02 8.35e-02
Fig. 6A for with r ≥ 0.8 or r ≤ -0.8.

Expression Fold Change Data [log2(FC)] - Download data


Gene ID Cerc 3S 24S Male Female
SmLINC02039-IBu 0 -3.01 -8.41 -3.05 -3.36
SmLINC02678-IBu 0 -3.18 -2.40 -3.22 -5.56
SmLINC02888-IBu 0 -1.98 -4.28 -4.50 -5.76
SmLINC06128-IBu 0 -1.91 -4.82 -10.42 -10.44
SmLINC06892-IBu 0 -2.10 -3.44 -12.52 -12.52
Smp_194040.1 0 -2.17 -6.63 -5.72 -6.95

Pearson Correlation Coefficient Data - Download data


Compared Gene Gene Pearson Correlation Value p-value B.-H. adjusted p-value
Smp_194040.1 SmLINC02039-IBu 0.88 1.22e-05 3.00e-04
Smp_194040.1 SmLINC02678-IBu 0.81 2.00e-04 2.60e-03
Smp_194040.1 SmLINC02888-IBu 0.94 1.92e-07 1.61e-05
Smp_194040.1 SmLINC06128-IBu 0.88 1.41e-05 3.00e-04
Smp_194040.1 SmLINC06892-IBu 0.90 4.85e-06 1.00e-04
Fig. S5 for with r ≥ 0.9 or r ≤ -0.9.

Expression Fold Change Data [log2(FC)] - Download data


Gene ID Cerc 3S 24S Male Female
Smp_018880.1 0 -2.71 -8.49 -10.03 -6.16
Smp_036400.2 0 -2.63 -11.95 -8.03 -7.25
Smp_085290.3 0 -2.11 -9.33 -13.07 -9.78
Smp_102670.1 0 -2.95 -8.79 -12.62 -12.62
Smp_106390.1 0 -2.35 -4.90 -10.78 -6.23
Smp_133770.1 0 -4.18 -7.68 -11.38 -11.45
Smp_145810.2 0 -1.83 -3.47 -4.75 -10.08
Smp_149670.1 0 -1.98 -3.69 -10.45 -9.35
Smp_150690.2 0 -2.07 -12.58 -12.58 -12.58
Smp_153240.1 0 -4.59 -8.67 -11.23 -11.04
Smp_169190.1 0 -3.08 -5.99 -19.20 -16.89
Smp_178240.1 0 -3.79 -9.33 -8.87 -11.00
Smp_184460.1 0 -2.24 -5.26 -13.63 -13.63
Smp_185360.1 0 -2.43 -5.85 -12.83 -12.83
Smp_194040.1 0 -2.17 -6.63 -5.72 -6.95
Smp_206150.1 0 -1.95 -4.12 -11.47 -11.47

Pearson Correlation Coefficient Data - Download data


Compared Gene Gene Pearson Correlation Value p-value B.-H. adjusted p-value
Smp_018880.1 Smp_194040.1 0.94 1.89e-07 1.67e-05
Smp_036400.2 Smp_194040.1 0.90 4.84e-06 1.00e-04
Smp_194040.1 Smp_085290.3 0.93 2.05e-07 1.77e-05
Smp_102670.1 Smp_194040.1 0.94 1.04e-07 1.11e-05
Smp_106390.1 Smp_194040.1 0.95 5.07e-08 6.82e-06
Smp_194040.1 Smp_133770.1 0.93 3.31e-07 2.47e-05
Smp_145810.2 Smp_194040.1 0.91 2.21e-06 9.35e-05
Smp_149670.1 Smp_194040.1 0.91 1.59e-06 7.42e-05
Smp_150690.2 Smp_194040.1 0.96 1.01e-08 2.30e-06
Smp_194040.1 Smp_153240.1 0.93 4.06e-07 2.84e-05
Smp_169190.1 Smp_194040.1 0.91 2.11e-06 9.05e-05
Smp_178240.1 Smp_194040.1 0.95 2.39e-08 4.09e-06
Smp_194040.1 Smp_184460.1 0.95 1.57e-08 3.09e-06
Smp_185360.1 Smp_194040.1 0.97 1.56e-09 6.79e-07
Smp_206150.1 Smp_194040.1 0.91 1.82e-06 8.16e-05