Schistosoma mansoni lncRNAs Database


This site contains the web resource described in the paper "Atlas of Schistosoma mansoni long non-coding RNAs and their expression correlation to protein-coding genes" (2018) by Elton J. R. Vasconcelos, Vinícius C. Mesel, Lucas F. daSilva, David S. Pires, Guilherme M. Lavezzo, Adriana S. A. Pereira, Murilo S. Amaral and Sergio Verjovski-Almeida, Database, Volume 2018: bay068, https://doi.org/10.1093/database/bay068.

Based on data from Vasconcelos, EJR et al., The Schistosoma mansoni genome encodes thousands of long noncoding RNAs predicted to be functional at different parasite life-cycle stages. Scientific Reports 7: 10508, 2017.

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Smp_194000.1 Data

Correlation between Smp_194000.1 Protein Coding Gene and neighbor SmLINC (neighbor to up to two Smps upstream or two Smps downstream of the SmLINC in the genome) or SmLINCs with putative trans-acting mechanisms, with correlation coefficient r ≥ 0.5 or r ≤ -0.5 [ Click Here for Details ]

Fig. 7A S3 for with r ≥ 0.5 or r ≤ -0.5.

Expression Fold Change Data [log2(FC)] - Download data

Pearson Correlation Coefficient Data - Download data

Correlation between Smp_194000.1 and robust SmLINCs (presenting four functional traits) across life cycle stages, with correlation coefficient r ≥ 0.8 or r ≤ -0.8 [ Click Here for Details ]

Fig. 6A for with r ≥ 0.8 or r ≤ -0.8.

Expression Fold Change Data [log2(FC)] - Download data

Gene ID Cerc 3S 24S Male Female
SmLINC00001-IBu 0 1.12 2.22 5.99 7.57
SmLINC00004-IBu 0 0.00 0.00 9.26 10.68
SmLINC00369-IBu 0 1.32 0.40 6.04 6.28
SmLINC00376-IBu 0 1.87 -0.39 3.34 3.93
SmLINC00525-IBu 0 -1.18 -2.31 1.77 2.53
SmLINC01084-IBu 0 -4.17 -2.32 2.88 3.57
SmLINC01431-IBu 0 4.28 4.33 10.35 10.82
SmLINC02084-IBu 0 2.05 2.87 9.42 9.88
SmLINC02255-IBu 0 -0.86 -1.80 -3.72 -4.71
SmLINC02630-IBu 0 -0.86 -1.66 -4.03 -11.09
SmLINC02657-IBu 0 -0.90 -1.95 -11.76 -11.76
SmLINC02678-IBu 0 -3.18 -2.40 -3.22 -5.56
SmLINC02888-IBu 0 -1.98 -4.28 -4.50 -5.76
SmLINC03927-IBu 0 0.00 3.30 7.68 8.27
SmLINC04421-IBu 0 -0.40 -1.98 2.75 3.71
SmLINC04521-IBu 0 0.00 2.57 11.17 11.06
SmLINC05289-IBu 0 0.00 0.00 7.07 8.36
SmLINC05604-IBu 0 3.08 0.00 9.77 11.08
SmLINC05989-IBu 0 -1.59 -3.64 -6.05 -6.59
SmLINC06128-IBu 0 -1.91 -4.82 -10.42 -10.44
SmLINC06535-IBu 0 -0.47 -1.74 -4.21 -5.43
SmLINC06892-IBu 0 -2.10 -3.44 -12.52 -12.52
Smp_194000.1 0 -1.48 -1.97 -6.64 -8.23

Pearson Correlation Coefficient Data - Download data

Compared Gene Gene Pearson Correlation Value p-value B.-H. adjusted p-value
Smp_194000.1 SmLINC00001-IBu -0.81 1.00e-04 2.20e-03
Smp_194000.1 SmLINC00004-IBu -0.82 1.00e-04 1.70e-03
Smp_194000.1 SmLINC00369-IBu -0.83 1.00e-04 1.40e-03
Smp_194000.1 SmLINC00376-IBu -0.84 8.21e-05 1.20e-03
Smp_194000.1 SmLINC00525-IBu -0.82 1.00e-04 2.00e-03
Smp_194000.1 SmLINC01084-IBu -0.84 7.03e-05 1.00e-03
Smp_194000.1 SmLINC01431-IBu -0.85 4.80e-05 8.00e-04
Smp_194000.1 SmLINC02084-IBu -0.83 1.00e-04 1.50e-03
Smp_194000.1 SmLINC02255-IBu 0.90 3.65e-06 1.00e-04
Smp_194000.1 SmLINC02630-IBu 0.89 5.60e-06 1.00e-04
Smp_194000.1 SmLINC02657-IBu 0.85 4.95e-05 8.00e-04
Smp_194000.1 SmLINC02678-IBu 0.82 1.00e-04 2.00e-03
Smp_194000.1 SmLINC02888-IBu 0.84 7.68e-05 1.10e-03
Smp_194000.1 SmLINC03927-IBu -0.80 3.00e-04 3.30e-03
Smp_194000.1 SmLINC04421-IBu -0.86 3.79e-05 6.00e-04
Smp_194000.1 SmLINC04521-IBu -0.80 3.00e-04 3.40e-03
Smp_194000.1 SmLINC05289-IBu -0.80 2.00e-04 3.00e-03
Smp_194000.1 SmLINC05604-IBu -0.81 1.00e-04 2.20e-03
Smp_194000.1 SmLINC05989-IBu 0.80 3.00e-04 3.10e-03
Smp_194000.1 SmLINC06128-IBu 0.85 4.94e-05 8.00e-04
Smp_194000.1 SmLINC06535-IBu 0.86 3.56e-05 6.00e-04
Smp_194000.1 SmLINC06892-IBu 0.83 1.00e-04 1.60e-03

Correlation between Smp_194000.1 and highly differentially expressed Smps (log2 FC ≥ 10 in at least one developmental stage) and/or SmLINCs, with correlation coefficient r ≥ 0.9 or r ≤ -0.9 [ Click Here for Details ]

Fig. S5 for with r ≥ 0.9 or r ≤ -0.9.

Expression Fold Change Data [log2(FC)] - Download data

Gene ID Cerc 3S 24S Male Female
Smp_055220.2 0 -2.15 -2.21 -13.10 -13.10
Smp_055340.2 0 8.73 10.47 12.13 12.52
Smp_149670.1 0 -1.98 -3.69 -10.45 -9.35
Smp_194000.1 0 -1.48 -1.97 -6.64 -8.23

Pearson Correlation Coefficient Data - Download data

Compared Gene Gene Pearson Correlation Value p-value B.-H. adjusted p-value
Smp_194000.1 Smp_055220.2 0.90 4.55e-06 1.00e-04
Smp_194000.1 Smp_055340.2 -0.91 1.82e-06 8.17e-05
Smp_149670.1 Smp_194000.1 0.93 2.14e-07 1.82e-05