Schistosoma mansoni lncRNAs Database



This site contains the web resource described in the paper "Atlas of Schistosoma mansoni long non-coding RNAs and their expression correlation to protein-coding genes" (2018) by Elton J. R. Vasconcelos, Vinícius C. Mesel, Lucas F. daSilva, David S. Pires, Guilherme M. Lavezzo, Adriana S. A. Pereira, Murilo S. Amaral and Sergio Verjovski-Almeida, Database, Volume 2018: bay068, https://doi.org/10.1093/database/bay068.


Based on data from Vasconcelos, EJR et al., The Schistosoma mansoni genome encodes thousands of long noncoding RNAs predicted to be functional at different parasite life-cycle stages. Scientific Reports 7: 10508, 2017.


Smp_193990.1 Data


Fig. 6A for with r ≥ 0.8 or r ≤ -0.8.

Expression Fold Change Data [log2(FC)] - Download data


Gene ID Cerc 3S 24S Male Female
SmLINC00026-IBu 0 1.41 -0.25 -3.45 -4.99
SmLINC00787-IBu 0 1.80 -4.72 -2.61 -3.96
SmLINC01429-IBu 0 1.94 -0.56 -4.06 -6.10
SmLINC01979-IBu 0 1.86 0.63 -5.36 -5.36
SmLINC03111-IBu 0 3.25 1.95 -5.91 -5.91
SmLINC03116-IBu 0 3.51 0.92 -2.09 -5.82
SmLINC03395-IBu 0 1.75 0.29 -4.35 -2.74
SmLINC03443-IBu 0 2.85 1.67 -0.40 -9.21
SmLINC04074-IBu 0 7.29 6.66 0.00 0.00
SmLINC04144-IBu 0 2.82 -0.04 -0.46 -2.35
SmLINC04271-IBu 0 0.79 -0.67 -2.59 -4.22
SmLINC05178-IBu 0 3.85 -0.08 -1.72 -5.31
SmLINC05840-IBu 0 1.40 -1.20 -2.41 -3.85
SmLINC05887-IBu 0 1.98 -0.51 -2.69 -3.80
SmLINC06138-IBu 0 2.13 -1.25 -2.27 -2.28
SmLINC06436-IBu 0 7.76 4.53 3.89 -2.06
Smp_193990.1 0 2.54 2.04 -11.18 -11.18

Pearson Correlation Coefficient Data - Download data


Compared Gene Gene Pearson Correlation Value p-value B.-H. adjusted p-value
Smp_193990.1 SmLINC00026-IBu 0.85 5.69e-05 9.00e-04
Smp_193990.1 SmLINC00787-IBu 0.80 3.00e-04 3.40e-03
Smp_193990.1 SmLINC01429-IBu 0.92 1.12e-06 5.58e-05
Smp_193990.1 SmLINC01979-IBu 0.94 1.44e-07 1.32e-05
Smp_193990.1 SmLINC03111-IBu 0.90 2.85e-06 1.00e-04
Smp_193990.1 SmLINC03116-IBu 0.87 1.59e-05 3.00e-04
Smp_193990.1 SmLINC03395-IBu 0.87 1.63e-05 3.00e-04
Smp_193990.1 SmLINC03443-IBu 0.89 7.69e-06 2.00e-04
Smp_193990.1 SmLINC04074-IBu 0.87 1.92e-05 4.00e-04
Smp_193990.1 SmLINC04144-IBu 0.80 3.00e-04 3.20e-03
Smp_193990.1 SmLINC04271-IBu 0.82 1.00e-04 2.00e-03
Smp_193990.1 SmLINC05178-IBu 0.82 1.00e-04 2.10e-03
Smp_193990.1 SmLINC05840-IBu 0.84 6.99e-05 1.00e-03
Smp_193990.1 SmLINC05887-IBu 0.81 2.00e-04 2.60e-03
Smp_193990.1 SmLINC06138-IBu 0.82 1.00e-04 1.70e-03
Smp_193990.1 SmLINC06436-IBu 0.85 5.47e-05 9.00e-04
Fig. S5 for with r ≥ 0.9 or r ≤ -0.9.

Expression Fold Change Data [log2(FC)] - Download data


Gene ID Cerc 3S 24S Male Female
SmLINC00060-IBu 0 0.94 -0.34 -3.66 -3.57
SmLINC00380-IBu 0 0.70 -0.39 -3.24 -4.62
SmLINC01179-IBu 0 0.87 0.04 -3.40 -3.45
SmLINC01429-IBu 0 1.94 -0.56 -4.06 -6.10
SmLINC01979-IBu 0 1.86 0.63 -5.36 -5.36
SmLINC03111-IBu 0 3.25 1.95 -5.91 -5.91
SmLINC03178-IBu 0 1.26 0.38 -7.16 -2.73
SmLINC04462-IBu 0 1.34 0.29 -3.67 -6.63
SmLINC06748-IBu 0 0.48 -0.43 -2.92 -4.67
Smp_032280.1 0 2.61 1.80 -2.26 -2.27
Smp_084210.1 0 0.94 -0.62 -4.01 -2.94
Smp_093740.2 0 1.50 0.51 -2.09 -4.86
Smp_136840.1 0 1.29 1.39 -6.10 -6.10
Smp_138890.1 0 2.00 0.89 -2.07 -3.06
Smp_142460.1 0 1.61 0.48 -3.34 -3.60
Smp_179670.1 0 1.45 -1.30 -8.21 -9.30
Smp_193650.1 0 2.01 1.40 -6.66 -6.66
Smp_193700.1 0 2.00 0.59 -11.32 -11.32
Smp_193990.1 0 2.54 2.04 -11.18 -11.18
Smp_200600.1 0 3.98 2.91 -2.23 -1.39
Smp_204820.1 0 1.32 1.25 -3.19 -4.27
Smp_204830.1 0 1.96 1.08 -3.62 -2.92
Smp_205220.1 0 2.68 1.94 -1.09 -2.07
Smp_212350.1 0 1.51 0.94 -3.08 -3.78

Pearson Correlation Coefficient Data - Download data


Compared Gene Gene Pearson Correlation Value p-value B.-H. adjusted p-value
Smp_193990.1 SmLINC00060-IBu 0.90 4.15e-06 1.00e-04
Smp_193990.1 SmLINC00380-IBu 0.92 1.07e-06 5.60e-05
Smp_193990.1 SmLINC01179-IBu 0.91 1.69e-06 7.74e-05
Smp_193990.1 SmLINC01429-IBu 0.92 1.12e-06 5.80e-05
Smp_193990.1 SmLINC01979-IBu 0.94 1.44e-07 1.38e-05
Smp_193990.1 SmLINC03111-IBu 0.90 2.85e-06 1.00e-04
Smp_193990.1 SmLINC03178-IBu 0.96 9.06e-09 2.13e-06
Smp_193990.1 SmLINC04462-IBu 0.90 3.08e-06 1.00e-04
Smp_193990.1 SmLINC06748-IBu 0.92 7.13e-07 4.20e-05
Smp_193990.1 Smp_032280.1 0.90 3.17e-06 1.00e-04
Smp_193990.1 Smp_084210.1 0.90 2.70e-06 1.00e-04
Smp_193990.1 Smp_093740.2 0.92 1.13e-06 5.81e-05
Smp_193990.1 Smp_136840.1 0.91 1.98e-06 8.65e-05
Smp_138890.1 Smp_193990.1 0.91 1.42e-06 6.84e-05
Smp_142460.1 Smp_193990.1 0.95 2.50e-08 4.22e-06
Smp_193990.1 Smp_179670.1 0.90 3.13e-06 1.00e-04
Smp_193990.1 Smp_193650.1 0.93 4.50e-07 3.05e-05
Smp_193990.1 Smp_193700.1 0.96 1.02e-08 2.31e-06
Smp_200600.1 Smp_193990.1 0.92 8.73e-07 4.85e-05
Smp_204820.1 Smp_193990.1 0.91 1.45e-06 6.94e-05
Smp_193990.1 Smp_204830.1 0.92 1.12e-06 5.79e-05
Smp_205220.1 Smp_193990.1 0.92 1.04e-06 5.49e-05
Smp_193990.1 Smp_212350.1 0.93 3.36e-07 2.49e-05