Schistosoma mansoni lncRNAs Database



This site contains the web resource described in the paper "Atlas of Schistosoma mansoni long non-coding RNAs and their expression correlation to protein-coding genes" (2018) by Elton J. R. Vasconcelos, Vinícius C. Mesel, Lucas F. daSilva, David S. Pires, Guilherme M. Lavezzo, Adriana S. A. Pereira, Murilo S. Amaral and Sergio Verjovski-Almeida, Database, Volume 2018: bay068, https://doi.org/10.1093/database/bay068.


Based on data from Vasconcelos, EJR et al., The Schistosoma mansoni genome encodes thousands of long noncoding RNAs predicted to be functional at different parasite life-cycle stages. Scientific Reports 7: 10508, 2017.


Smp_193730.1 Data


Fig. 7A S3 for with r ≥ 0.5 or r ≤ -0.5.

Expression Fold Change Data [log2(FC)] - Download data


Gene ID Cerc 3S 24S Male Female
SmLINC04271-IBu 0 0.79 -0.67 -2.59 -4.22
Smp_193730.1 0 -1.11 -2.32 -9.38 -7.88

Pearson Correlation Coefficient Data - Download data


Compared Gene Gene Pearson Correlation Value p-value B.-H. adjusted p-value
Smp_193730.1 SmLINC04271-IBu 0.61 1.48e-02 4.61e-02
Fig. 6A for with r ≥ 0.8 or r ≤ -0.8.

Expression Fold Change Data [log2(FC)] - Download data


Gene ID Cerc 3S 24S Male Female
SmLINC00001-IBu 0 1.12 2.22 5.99 7.57
SmLINC00004-IBu 0 0.00 0.00 9.26 10.68
SmLINC00369-IBu 0 1.32 0.40 6.04 6.28
SmLINC00376-IBu 0 1.87 -0.39 3.34 3.93
SmLINC01122-IBu 0 0.00 0.00 6.36 6.32
SmLINC01431-IBu 0 4.28 4.33 10.35 10.82
SmLINC02084-IBu 0 2.05 2.87 9.42 9.88
SmLINC02546-IBu 0 1.90 1.01 8.94 9.30
SmLINC04421-IBu 0 -0.40 -1.98 2.75 3.71
SmLINC04478-IBu 0 -1.64 -5.06 4.33 4.42
SmLINC04521-IBu 0 0.00 2.57 11.17 11.06
SmLINC05274-IBu 0 -0.85 -1.40 -4.98 -5.55
SmLINC05289-IBu 0 0.00 0.00 7.07 8.36
SmLINC05604-IBu 0 3.08 0.00 9.77 11.08
SmLINC06490-IBu 0 -0.11 0.31 -3.82 -4.89
Smp_193730.1 0 -1.11 -2.32 -9.38 -7.88

Pearson Correlation Coefficient Data - Download data


Compared Gene Gene Pearson Correlation Value p-value B.-H. adjusted p-value
Smp_193730.1 SmLINC00001-IBu -0.80 2.00e-04 2.70e-03
Smp_193730.1 SmLINC00004-IBu -0.83 1.00e-04 1.50e-03
Smp_193730.1 SmLINC00369-IBu -0.84 8.15e-05 1.20e-03
Smp_193730.1 SmLINC00376-IBu -0.83 1.00e-04 1.60e-03
Smp_193730.1 SmLINC01122-IBu -0.80 3.00e-04 3.20e-03
Smp_193730.1 SmLINC01431-IBu -0.85 4.08e-05 7.00e-04
Smp_193730.1 SmLINC02084-IBu -0.83 1.00e-04 1.40e-03
Smp_193730.1 SmLINC02546-IBu -0.80 2.00e-04 3.00e-03
Smp_193730.1 SmLINC04421-IBu -0.86 2.85e-05 5.00e-04
Smp_193730.1 SmLINC04478-IBu -0.80 2.00e-04 2.80e-03
Smp_193730.1 SmLINC04521-IBu -0.81 2.00e-04 2.70e-03
Smp_193730.1 SmLINC05274-IBu 0.83 9.38e-05 1.30e-03
Smp_193730.1 SmLINC05289-IBu -0.81 2.00e-04 2.70e-03
Smp_193730.1 SmLINC05604-IBu -0.82 1.00e-04 2.00e-03
Smp_193730.1 SmLINC06490-IBu 0.83 9.40e-05 1.30e-03
Fig. S5 for with r ≥ 0.9 or r ≤ -0.9.

Expression Fold Change Data [log2(FC)] - Download data


Gene ID Cerc 3S 24S Male Female
Smp_015850.2 0 -0.79 -1.42 -13.43 -13.43
Smp_193730.1 0 -1.11 -2.32 -9.38 -7.88

Pearson Correlation Coefficient Data - Download data


Compared Gene Gene Pearson Correlation Value p-value B.-H. adjusted p-value
Smp_193730.1 Smp_015850.2 0.9 4.42e-06 1.00e-04