Schistosoma mansoni lncRNAs Database



This site contains the web resource described in the paper "Atlas of Schistosoma mansoni long non-coding RNAs and their expression correlation to protein-coding genes" (2018) by Elton J. R. Vasconcelos, Vinícius C. Mesel, Lucas F. daSilva, David S. Pires, Guilherme M. Lavezzo, Adriana S. A. Pereira, Murilo S. Amaral and Sergio Verjovski-Almeida, Database, Volume 2018: bay068, https://doi.org/10.1093/database/bay068.


Based on data from Vasconcelos, EJR et al., The Schistosoma mansoni genome encodes thousands of long noncoding RNAs predicted to be functional at different parasite life-cycle stages. Scientific Reports 7: 10508, 2017.


Smp_193700.1 Data


Fig. 6A for with r ≥ 0.8 or r ≤ -0.8.

Expression Fold Change Data [log2(FC)] - Download data


Gene ID Cerc 3S 24S Male Female
SmLINC00026-IBu 0 1.41 -0.25 -3.45 -4.99
SmLINC00787-IBu 0 1.80 -4.72 -2.61 -3.96
SmLINC00893-IBu 0 1.08 -1.15 -3.04 -4.37
SmLINC01230-IBu 0 6.45 0.00 2.13 3.20
SmLINC01429-IBu 0 1.94 -0.56 -4.06 -6.10
SmLINC01462-IBu 0 0.69 -0.90 -3.10 -4.62
SmLINC01979-IBu 0 1.86 0.63 -5.36 -5.36
SmLINC03111-IBu 0 3.25 1.95 -5.91 -5.91
SmLINC03116-IBu 0 3.51 0.92 -2.09 -5.82
SmLINC03395-IBu 0 1.75 0.29 -4.35 -2.74
SmLINC03443-IBu 0 2.85 1.67 -0.40 -9.21
SmLINC04074-IBu 0 7.29 6.66 0.00 0.00
SmLINC04106-IBu 0 1.60 -0.86 -5.26 -10.78
SmLINC04129-IBu 0 2.02 -0.05 -5.02 -3.35
SmLINC04144-IBu 0 2.82 -0.04 -0.46 -2.35
SmLINC04271-IBu 0 0.79 -0.67 -2.59 -4.22
SmLINC05178-IBu 0 3.85 -0.08 -1.72 -5.31
SmLINC05840-IBu 0 1.40 -1.20 -2.41 -3.85
SmLINC05887-IBu 0 1.98 -0.51 -2.69 -3.80
SmLINC06138-IBu 0 2.13 -1.25 -2.27 -2.28
SmLINC06436-IBu 0 7.76 4.53 3.89 -2.06
Smp_193700.1 0 2.00 0.59 -11.32 -11.32

Pearson Correlation Coefficient Data - Download data


Compared Gene Gene Pearson Correlation Value p-value B.-H. adjusted p-value
Smp_193700.1 SmLINC00026-IBu 0.91 2.50e-06 9.84e-05
Smp_193700.1 SmLINC00787-IBu 0.83 9.83e-05 1.30e-03
Smp_193700.1 SmLINC00893-IBu 0.82 1.00e-04 2.10e-03
Smp_193700.1 SmLINC01230-IBu 0.83 1.00e-04 1.50e-03
Smp_193700.1 SmLINC01429-IBu 0.92 1.11e-06 5.53e-05
Smp_193700.1 SmLINC01462-IBu 0.80 3.00e-04 3.30e-03
Smp_193700.1 SmLINC01979-IBu 0.92 5.87e-07 3.52e-05
Smp_193700.1 SmLINC03111-IBu 0.92 5.76e-07 3.47e-05
Smp_193700.1 SmLINC03116-IBu 0.89 6.04e-06 1.00e-04
Smp_193700.1 SmLINC03395-IBu 0.86 3.57e-05 6.00e-04
Smp_193700.1 SmLINC03443-IBu 0.91 1.85e-06 7.95e-05
Smp_193700.1 SmLINC04074-IBu 0.83 1.00e-04 1.50e-03
Smp_193700.1 SmLINC04106-IBu 0.82 1.00e-04 1.90e-03
Smp_193700.1 SmLINC04129-IBu 0.86 3.62e-05 6.00e-04
Smp_193700.1 SmLINC04144-IBu 0.87 1.71e-05 3.00e-04
Smp_193700.1 SmLINC04271-IBu 0.89 8.59e-06 2.00e-04
Smp_193700.1 SmLINC05178-IBu 0.86 2.83e-05 5.00e-04
Smp_193700.1 SmLINC05840-IBu 0.91 1.90e-06 8.12e-05
Smp_193700.1 SmLINC05887-IBu 0.87 1.86e-05 4.00e-04
Smp_193700.1 SmLINC06138-IBu 0.89 6.60e-06 1.00e-04
Smp_193700.1 SmLINC06436-IBu 0.89 6.08e-06 1.00e-04
Fig. S5 for with r ≥ 0.9 or r ≤ -0.9.

Expression Fold Change Data [log2(FC)] - Download data


Gene ID Cerc 3S 24S Male Female
SmLINC00026-IBu 0 1.41 -0.25 -3.45 -4.99
SmLINC00060-IBu 0 0.94 -0.34 -3.66 -3.57
SmLINC00380-IBu 0 0.70 -0.39 -3.24 -4.62
SmLINC00616-IBu 0 3.61 -0.30 -0.27 -1.36
SmLINC00965-IBu 0 0.53 -1.66 -4.62 -2.88
SmLINC01023-IBu 0 2.08 -0.18 -2.05 -2.12
SmLINC01085-IBu 0 1.03 -1.97 -3.96 -8.11
SmLINC01096-IBu 0 0.65 -0.50 -3.20 -5.48
SmLINC01179-IBu 0 0.87 0.04 -3.40 -3.45
SmLINC01272-IBu 0 1.03 -1.11 -5.32 -3.27
SmLINC01429-IBu 0 1.94 -0.56 -4.06 -6.10
SmLINC01977-IBu 0 0.81 -1.32 -2.61 -5.10
SmLINC01979-IBu 0 1.86 0.63 -5.36 -5.36
SmLINC02652-IBu 0 1.83 -0.68 -3.03 -3.58
SmLINC03051-IBu 0 5.29 2.78 1.72 3.18
SmLINC03111-IBu 0 3.25 1.95 -5.91 -5.91
SmLINC03178-IBu 0 1.26 0.38 -7.16 -2.73
SmLINC03443-IBu 0 2.85 1.67 -0.40 -9.21
SmLINC04011-IBu 0 0.46 -0.74 -3.28 -4.04
SmLINC04046-IBu 0 0.73 -1.28 -4.08 -3.88
SmLINC04179-IBu 0 2.76 1.83 -2.20 -2.09
SmLINC04201-IBu 0 1.69 -1.23 -5.48 -5.48
SmLINC04313-IBu 0 0.55 -0.82 -4.39 -4.56
SmLINC05513-IBu 0 3.89 -0.54 -2.27 -2.77
SmLINC05840-IBu 0 1.40 -1.20 -2.41 -3.85
SmLINC05844-IBu 0 6.79 3.72 0.00 0.00
SmLINC06748-IBu 0 0.48 -0.43 -2.92 -4.67
Smp_005080.1 0 0.96 -0.03 -3.26 -4.08
Smp_084210.1 0 0.94 -0.62 -4.01 -2.94
Smp_093740.2 0 1.50 0.51 -2.09 -4.86
Smp_138890.1 0 2.00 0.89 -2.07 -3.06
Smp_142120.1 0 2.79 0.55 -2.29 -1.47
Smp_142460.1 0 1.61 0.48 -3.34 -3.60
Smp_164180.1 0 3.02 1.05 -0.21 -1.81
Smp_171540.2 0 1.44 -2.06 -3.96 -2.73
Smp_179670.1 0 1.45 -1.30 -8.21 -9.30
Smp_193650.1 0 2.01 1.40 -6.66 -6.66
Smp_193700.1 0 2.00 0.59 -11.32 -11.32
Smp_193990.1 0 2.54 2.04 -11.18 -11.18
Smp_200480.1 0 1.75 -1.49 -6.94 -6.94
Smp_200600.1 0 3.98 2.91 -2.23 -1.39
Smp_201230.1 0 1.72 -0.34 -3.72 -2.51
Smp_202990.1 0 3.06 1.30 -2.66 -4.70
Smp_205220.1 0 2.68 1.94 -1.09 -2.07
Smp_212350.1 0 1.51 0.94 -3.08 -3.78

Pearson Correlation Coefficient Data - Download data


Compared Gene Gene Pearson Correlation Value p-value B.-H. adjusted p-value
Smp_193700.1 SmLINC00026-IBu 0.91 2.50e-06 1.00e-04
Smp_193700.1 SmLINC00060-IBu 0.91 1.51e-06 7.15e-05
Smp_193700.1 SmLINC00380-IBu 0.91 2.46e-06 1.00e-04
Smp_193700.1 SmLINC00616-IBu 0.90 2.67e-06 1.00e-04
Smp_193700.1 SmLINC00965-IBu 0.91 2.43e-06 9.99e-05
Smp_193700.1 SmLINC01023-IBu 0.92 5.97e-07 3.72e-05
Smp_193700.1 SmLINC01085-IBu 0.90 3.79e-06 1.00e-04
Smp_193700.1 SmLINC01096-IBu 0.90 4.02e-06 1.00e-04
Smp_193700.1 SmLINC01179-IBu 0.93 2.16e-07 1.83e-05
Smp_193700.1 SmLINC01272-IBu 0.93 2.66e-07 2.12e-05
Smp_193700.1 SmLINC01429-IBu 0.92 1.11e-06 5.75e-05
Smp_193700.1 SmLINC01977-IBu 0.94 8.09e-08 9.36e-06
Smp_193700.1 SmLINC01979-IBu 0.92 5.87e-07 3.67e-05
Smp_193700.1 SmLINC02652-IBu 0.93 3.37e-07 2.50e-05
Smp_193700.1 SmLINC03051-IBu 0.90 3.17e-06 1.00e-04
Smp_193700.1 SmLINC03111-IBu 0.92 5.76e-07 3.62e-05
Smp_193700.1 SmLINC03178-IBu 0.94 9.01e-08 1.00e-05
Smp_193700.1 SmLINC03443-IBu 0.91 1.85e-06 8.24e-05
Smp_193700.1 SmLINC04011-IBu 0.92 1.18e-06 6.03e-05
Smp_193700.1 SmLINC04046-IBu 0.90 3.62e-06 1.00e-04
Smp_193700.1 SmLINC04179-IBu 0.91 1.88e-06 8.33e-05
Smp_193700.1 SmLINC04201-IBu 0.92 7.99e-07 4.55e-05
Smp_193700.1 SmLINC04313-IBu 0.90 3.93e-06 1.00e-04
Smp_193700.1 SmLINC05513-IBu 0.90 4.50e-06 1.00e-04
Smp_193700.1 SmLINC05840-IBu 0.91 1.90e-06 8.41e-05
Smp_193700.1 SmLINC05844-IBu 0.91 1.97e-06 8.60e-05
Smp_193700.1 SmLINC06748-IBu 0.90 3.02e-06 1.00e-04
Smp_005080.1 Smp_193700.1 0.92 5.57e-07 3.54e-05
Smp_193700.1 Smp_084210.1 0.93 4.09e-07 2.86e-05
Smp_193700.1 Smp_093740.2 0.90 3.78e-06 1.00e-04
Smp_138890.1 Smp_193700.1 0.93 2.37e-07 1.96e-05
Smp_142120.1 Smp_193700.1 0.90 2.89e-06 1.00e-04
Smp_142460.1 Smp_193700.1 0.94 1.93e-07 1.70e-05
Smp_193700.1 Smp_164180.1 0.91 2.38e-06 9.83e-05
Smp_171540.2 Smp_193700.1 0.91 1.59e-06 7.40e-05
Smp_193700.1 Smp_179670.1 0.93 4.92e-07 3.25e-05
Smp_193700.1 Smp_193650.1 0.94 8.38e-08 9.59e-06
Smp_193990.1 Smp_193700.1 0.96 1.02e-08 2.31e-06
Smp_200480.1 Smp_193700.1 0.92 1.09e-06 5.68e-05
Smp_200600.1 Smp_193700.1 0.92 6.31e-07 3.86e-05
Smp_193700.1 Smp_201230.1 0.92 1.02e-06 5.43e-05
Smp_202990.1 Smp_193700.1 0.91 1.40e-06 6.76e-05
Smp_205220.1 Smp_193700.1 0.92 6.18e-07 3.81e-05
Smp_193700.1 Smp_212350.1 0.90 3.58e-06 1.00e-04